Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H21
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    29   2.1  
06_03_1406 - 29949367-29949556,29949753-29949837,29950625-299507...    27   6.4  

>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 229 SVRFIYGTNCINQRTTIYCFVRFRYGNF 312
           ++R+ + T C+   T  +C   +RYGNF
Sbjct: 703 NLRWCHVTRCLKMHTVFFCDDDWRYGNF 730


>06_03_1406 -
           29949367-29949556,29949753-29949837,29950625-29950791,
           29951232-29952049
          Length = 419

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 345 SDDHRPYTLHIEIPITEPDKAINGCSLVYTVRSV 244
           +DD  P  LH  + ++ PD  ++G    YT  SV
Sbjct: 147 ADDPNPGPLHYGLTLSHPDPRLDGILATYTSFSV 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,003,640
Number of Sequences: 37544
Number of extensions: 258808
Number of successful extensions: 516
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)