Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H21
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81117-8|CAB03316.2| 334|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 29 2.5
L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 29 2.5
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 29 2.5
AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical... 28 4.4
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 5.8
Z81551-2|CAB04482.4| 413|Caenorhabditis elegans Hypothetical pr... 27 5.8
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 5.8
AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical ... 27 5.8
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 27 7.6
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 27 7.6
>Z81117-8|CAB03316.2| 334|Caenorhabditis elegans Hypothetical
protein T06E6.7 protein.
Length = 334
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 18 GNSTKFKIYFILNSWNSFHKSCLLFIDNRY 107
G ST F+IYF+++++ S L+ ++NRY
Sbjct: 84 GISTPFQIYFVMSTFFIVMVSHLMIMENRY 113
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 61 GILFTKVACYLLIIVMFSLHLNIFCDHEYVKNSSGYGIYDYRCGAASWR*RGTSA 225
G +T + + IIV FS+ LNI D +++ G DY S+ GTS+
Sbjct: 514 GKTYTYILIMVAIIVSFSVGLNIIVDPYLNRSTMKIGDQDYTKTTDSYETIGTSS 568
>L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical
protein R05D3.9 protein.
Length = 646
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 273 NHLLLCPVPLWEFQCEEYKACGRPNILIDNDK*I-AIVEAYDTNYN 407
N + C P ++C+EY A G N LI D+ A+ +D +N
Sbjct: 117 NENIECSSPTDHYRCQEYPASGTWNYLIVEDQQKGAVTYTFDRKFN 162
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 61 GILFTKVACYLLIIVMFSLHLNIFCDHEYVKNSSGYGIYDYRCGAASWR*RGTSA 225
G +T + + IIV FS+ LNI D +++ G DY S+ GTS+
Sbjct: 514 GKTYTYILIMVAIIVSFSVGLNIIVDPYLNRSTMKIGDQDYTKTTDSYETIGTSS 568
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +1
Query: 61 GILFTKVACYLLIIVMFSLHLNIFCDHEYVKNSSGYGIYDYRCGAASWR*RGTSA 225
G +T + + IIV FS+ LNI D +++ G DY S+ GTS+
Sbjct: 514 GKTYTYILIMVAIIVSFSVGLNIIVDPYLNRSTMKIGDQDYTKTTDSYETIGTSS 568
>AL132865-12|CAB60601.1| 345|Caenorhabditis elegans Hypothetical
protein Y62E10A.14 protein.
Length = 345
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -2
Query: 196 RHRNGNHIYHNHSNS*RIHGHKKYSNVTKT*RLSINSRQLL*K---EFHEFKIK 44
RH +Y+N+SN+ G +Y + +T + N R L+ + E HEF+I+
Sbjct: 263 RHVETRIVYNNNSNARNTSGRSRYIELEQTVKCK-NRRVLIVEDPVEIHEFEIE 315
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 459 QIDKHCYDINVETCC*FSCSLCHKLPRSLFICHCQLRYSDDH 334
+++ H ++ C F H +S+ C CQ+RY + H
Sbjct: 13 EVEPHFGGVSCRACAAFFRRYFHS-KKSVISCTCQIRYQNSH 53
>Z81551-2|CAB04482.4| 413|Caenorhabditis elegans Hypothetical
protein F56A12.2 protein.
Length = 413
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 360 CQLRYSDDHRPYTLHIEIPITEPDKAINGCSLVYTV 253
CQ R SDD +TL ++ P+T + VY +
Sbjct: 17 CQYRASDDSPQFTLWLDGPVTISAAIFSAIGTVYAI 52
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 459 QIDKHCYDINVETCC*FSCSLCHKLPRSLFICHCQLRYSDDH 334
+++ H ++ C F H +S+ C CQ+RY + H
Sbjct: 15 EVEPHFGGVSCRACAAFFRRYFHS-KKSVISCTCQIRYQNSH 55
>AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical
protein Y65B4BL.2 protein.
Length = 619
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 106 MFSLHLNIFCDHEYVKNSSGYGIYDYR 186
+F ++L CDHE + S G D+R
Sbjct: 488 LFQVYLKPNCDHEQLAESDSMGFVDFR 514
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 471 NNVTQIDKHCYDINVETCC*FSCSLCHKLPRSLFICHCQLRYSDD 337
+N+ ++ + D+++ C ++CH++ +L H Q RY D
Sbjct: 193 SNIGKVSRFPQDVSIGWGCTSLGTVCHEIGHALGFYHEQARYDRD 237
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 471 NNVTQIDKHCYDINVETCC*FSCSLCHKLPRSLFICHCQLRYSDD 337
+N+ ++ + D+++ C ++CH++ +L H Q RY D
Sbjct: 193 SNIGKVSRFPQDVSIGWGCTSLGTVCHEIGHALGFYHEQARYDRD 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,820,365
Number of Sequences: 27780
Number of extensions: 255766
Number of successful extensions: 598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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