Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H19
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   2.0  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   2.6  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   8.1  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 204 TETYFRYRCLVYLRNIINISKTHADNQNYGTELN 103
           T  Y    C  Y+ +  N  K H  NQ YGTE++
Sbjct: 313 TGIYVLLLCCYYIFDTCNGQKNHFRNQIYGTEVH 346


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 286 PYWADAGKPTLNGQSPDAPDAYPNCANDPYCAATAVQNYMNKFGQDCNGD 435
           P+ +D  K T      DA   YP+ ++ PYC +    ++ + F  D + D
Sbjct: 141 PFSSDTLKKTYLSSENDA--RYPSVSDSPYCESEGFSSFEDDFEIDPDTD 188


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 355 NCANDPYCAATAVQNYMNKFGQDCNGDGVVNCY 453
           NC  D YC   +V+ ++N     C G+G +  Y
Sbjct: 89  NCDCDQYCPKCSVELFLN---AKCTGEGTMEIY 118


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 465 HP-QVSRIRVQRRPSLQLRKYFQPMRGRGLR*PWLPN 572
           HP ++  +  Q  PSL ++ Y +P  G+G   P LP+
Sbjct: 93  HPYELDPVSKQAHPSLAVKAYHRPAAGKG---PILPS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,741
Number of Sequences: 5004
Number of extensions: 48251
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)