Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H19
         (581 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY393551-1|AAR32601.1|  164|Homo sapiens immunoglobulin heavy ch...    32   1.7  
BC041175-1|AAH41175.1|  434|Homo sapiens transcription factor AP...    30   5.2  
AY326454-1|AAQ91614.1|  442|Homo sapiens transcription factor AP...    30   5.2  
AL157951-1|CAI23520.1|  442|Homo sapiens transcription factor AP...    30   5.2  
AY393565-1|AAR32613.1|  152|Homo sapiens immunoglobulin heavy ch...    30   6.8  
AY393555-1|AAR32605.1|  152|Homo sapiens immunoglobulin heavy ch...    30   6.8  
AF082197-1|AAC36105.1|  118|Homo sapiens anti-pneumococcal/anti-...    29   9.1  

>AY393551-1|AAR32601.1|  164|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 164

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = +1

Query: 172 NQAPVTEVCLGCICQAVSGCKQGTKCEGDACGLFHITWPYWADAGKPTLNGQSPDAPDAY 351
           N  PV      C   +V  C+  T+C       FH     W      T++  S  AP  +
Sbjct: 74  NMDPVDTATYYCARISVEDCRS-TRCHSRFRYYFHYGMDVWGQGTTVTVSSGSASAPTLF 132

Query: 352 P--NCANDP 372
           P  +C N P
Sbjct: 133 PLVSCENSP 141


>BC041175-1|AAH41175.1|  434|Homo sapiens transcription factor AP-2
           epsilon (activating enhancer binding protein 2 epsilo
           protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 310 PTLNGQSPDAPDAYPNCANDPY 375
           P   GQ+PDA  A+P+ A DPY
Sbjct: 55  PLPYGQAPDAAAAFPHLAGDPY 76


>AY326454-1|AAQ91614.1|  442|Homo sapiens transcription factor AP-2
           epsilon protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 310 PTLNGQSPDAPDAYPNCANDPY 375
           P   GQ+PDA  A+P+ A DPY
Sbjct: 63  PLPYGQAPDAAAAFPHLAGDPY 84


>AL157951-1|CAI23520.1|  442|Homo sapiens transcription factor AP-2
           epsilon (activating enhancer binding protein 2 epsilo
           protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 5.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 310 PTLNGQSPDAPDAYPNCANDPY 375
           P   GQ+PDA  A+P+ A DPY
Sbjct: 63  PLPYGQAPDAAAAFPHLAGDPY 84


>AY393565-1|AAR32613.1|  152|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 265 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANDP 372
           GL H  + YW      T++  S  AP  +P  +C N P
Sbjct: 92  GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129


>AY393555-1|AAR32605.1|  152|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 152

 Score = 29.9 bits (64), Expect = 6.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 265 GLFHITWPYWADAGKPTLNGQSPDAPDAYP--NCANDP 372
           GL H  + YW      T++  S  AP  +P  +C N P
Sbjct: 92  GLLHTPFDYWGQGTLVTVSSGSASAPTLFPLVSCENSP 129


>AF082197-1|AAC36105.1|  118|Homo sapiens
           anti-pneumococcal/anti-dsDNA Ig H-chain Fab fragment
           protein.
          Length = 118

 Score = 29.5 bits (63), Expect = 9.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 358 CANDPYCAATAVQNYMNKFGQ 420
           CA DPYC++T+  + M+ +GQ
Sbjct: 90  CARDPYCSSTSCHHGMDVWGQ 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,934,523
Number of Sequences: 237096
Number of extensions: 1856845
Number of successful extensions: 3856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3856
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)