Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H19
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    26   0.31 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    26   0.31 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.2  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   GARAYYTPFFISIFNYYFIL 66
           G   Y+ P F+ I++Y+FI+
Sbjct: 221 GIWVYFVPLFLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   GARAYYTPFFISIFNYYFIL 66
           G   Y+ P F+ I++Y+FI+
Sbjct: 97  GIWVYFVPLFLIIYSYWFII 116


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 16  AYYTPFFISIFNYYFI 63
           ++Y P F+ +F YY I
Sbjct: 214 SFYLPLFVMVFTYYKI 229


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 238 LACSQTQPGRCNRD 197
           LAC  ++PG+C R+
Sbjct: 172 LACISSRPGQCGRE 185


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 193 VCLGCICQAVSG 228
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 193 VCLGCICQAVSG 228
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 193 VCLGCICQAVSG 228
           VCLG +CQ  +G
Sbjct: 8   VCLGIVCQGTTG 19


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 194 YVSVASARLCLAASKALSVKATLAVCSISHGRTG 295
           YV ++   LC   + AL ++ T  VC I     G
Sbjct: 696 YVLLSGILLCYLVTFALVLRPTDIVCGIQRFAAG 729


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 188 RKYVSVASARLCLAASKALSVKATLAVC 271
           R YVS  S+ + +    A S++  LA+C
Sbjct: 117 RAYVSEMSSYVSVLTIVAFSMERYLAIC 144


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 494 KATFPSTT*IFSTNAWPWSPLTVVTK 571
           +A FP    + ++  WP+ P   V K
Sbjct: 269 EAYFPKLDSLVASRTWPFRPSGTVLK 294


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -1

Query: 287 GHVIWNKPQASPSHLVPCLQPDTAWQMQPRH 195
           G + W K        +  L P  AWQ+   H
Sbjct: 85  GFLAWAKHNPRGKDALWSLVPHMAWQLSTAH 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,471
Number of Sequences: 438
Number of extensions: 3720
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)