Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H18
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 34 0.013
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.12
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 29 0.38
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 3.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.2
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 6.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 6.2
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.2
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 34.3 bits (75), Expect = 0.013
Identities = 31/108 (28%), Positives = 42/108 (38%)
Frame = +1
Query: 259 SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPI 438
S S+P S P SP+ SPT YSP + +Y +P YS P P + A
Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPT---SPSYSP--TSPSYSPTSPSYS-PTSPSYS--ATS 1610
Query: 439 PISIPAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVAQT 582
P P S +P S + P P +P + S P + T
Sbjct: 1611 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1658
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.12
Identities = 27/102 (26%), Positives = 36/102 (35%)
Frame = +1
Query: 271 PPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQAPQYSQPEVPIHQNMAPIPISI 450
PPS+ + SP +P R + P S K + P P +P+ P+P I
Sbjct: 991 PPSAPLSKPVSTSP-AAPLARVPPV--PKLSSKAPPVPLPSADAPPIPVPSTAPPVP--I 1045
Query: 451 PAGASLTPVSLQHVQLVPCMCPVAPEEAEKLQEQSGAGPYVA 576
P P S P P E + SGA P A
Sbjct: 1046 PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 29.5 bits (63), Expect = 0.38
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Frame = +1
Query: 223 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSPNVSPTIRYQYMYSPYESHKTYQLQ---- 384
V+SS + W + SA PS+ W QP +P +P + P T Q
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSSLPPWQQPTQQSAVQPS 475
Query: 385 --APQYSQPEVPIHQNMAPIPISIPAGASLTPV 477
P + P +P P P G L P+
Sbjct: 476 NLVPSQNAPFIPGTSAPLPPTTFAPPGVPLPPI 508
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 3.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 299 NHYLLTSPRQSVINICIRHMNRTK 370
NHY + S++N C+R++ +K
Sbjct: 22 NHYDMQREESSIVNACLRYLGYSK 45
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 301 PLSPNVSPTIRYQYMYSPYESH-KTYQLQAPQYSQPEVPIHQNMAPIPISIPAGAS 465
P+ PNV + YS S+ +TYQ A + +P AP+P+ P S
Sbjct: 142 PVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVS 197
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 417 PPKYGSYTYQYSCRSEPYPGI 479
PP G+ Y+ SC S+ Y G+
Sbjct: 2134 PPAMGTLKYKLSCFSDSYMGV 2154
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 361 SHKTYQLQAPQYSQPEVPIHQNMAPIPISIPAGASLTP 474
SH ++ + P QP +H++ + + I PAG + P
Sbjct: 90 SHHAHRHEPPVSDQPVGIVHEDESYVVIDKPAGVPVHP 127
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +1
Query: 295 VQPLSPNVSPTIR-----YQYMYSPYESHKT-YQLQAPQYS-QPEVPIHQNMAPIPIS 447
V P +PN ++ ++ SP ES + + LQ +S +PE PI Q IP+S
Sbjct: 190 VSPSNPNFLTPLKPIDGNQEWQQSPLESPLSMHSLQESLHSVEPESPIFQQAPQIPLS 247
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 8.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 319 SPTIRYQYMYSPYESHKTYQLQAPQYSQ 402
SP+ R+ YSP TYQ + YSQ
Sbjct: 321 SPSSRFPTPYSPSVPFGTYQEKEKSYSQ 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,633
Number of Sequences: 5004
Number of extensions: 55718
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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