Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H17
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 37 0.003
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 28 1.2
SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.1
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 26 5.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 6.5
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch... 25 6.5
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 8.7
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 8.7
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.7
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 8.7
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 307 ERFIELQDLLHGFRDPHVMDVKMGTRTF 390
ER+I ++DL G + P V+DVKMGTR +
Sbjct: 713 ERYIVIEDLTSGMKRPCVLDVKMGTRQY 740
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 253 DKRLELHTHHVPDYELDDPPERDVSIRFQDQRVPESQDDQLAGTTPTIG 107
DK E +T + EL DP ++DV D + + D+ L PT+G
Sbjct: 306 DKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDIMDEFLVSYGPTLG 354
>SPAC607.04 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 316 IELQDLLHGFRDPHVMDVKMGTRTFLEDEVSNAHARSD 429
I L+++L+ P VMD+K+G + + +D R D
Sbjct: 83 IILENILYQMETPCVMDIKLGKQLWADDAPLEKRKRLD 120
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 427 DLYEKMVRLDPNAPTEAEHEARAVTKL 507
DLY K + +DP +P + A A +L
Sbjct: 104 DLYTKAIEIDPTSPVYYSNRAAAYNQL 130
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 211 HNPERDAYEALAACPHMRAVIPRYYREL 294
+NP+ AYEA+ C M ++Y+EL
Sbjct: 651 YNPDTGAYEAVCKC--MSGFSDQFYKEL 676
>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 6.5
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Frame = +1
Query: 262 RAVIPRYYRELEYGGERFIELQDLLHGFRDPHVMDVKMGTRTFLEDEVSNA------HAR 423
+++I E+ G L L GF DP D + + E ++ AR
Sbjct: 244 KSIIDDEMLEIPLGKHNNTNLPALTAGFLDPVESDDEFVEKELEEVDIPKRKNRRGQRAR 303
Query: 424 SDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVKMPGQP 591
++EK N + E R++ + R ++ E+Q+ A + + P +P
Sbjct: 304 QAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQKP 359
>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 980
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +1
Query: 385 TFLEDEVSNAHARSDLYEKM-----VRLDPNAPTEAEHEARA 495
+F ED + N+ + + KM ++DPN PT+AE +++
Sbjct: 937 SFDEDLLRNSKTKIETLVKMGERIGQKIDPNKPTDAEDHSKS 978
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = -2
Query: 205 DDPPERDVSIRFQDQRVPESQDDQLAGTTPTIGISTRHP 89
D PPERDVS++ ++ S T + R P
Sbjct: 95 DQPPERDVSLKESSNKINPSNFFDSEQITKINAVKKRFP 133
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 394 QGMSVCPS*HPLHVGHGSHE 335
+GM CPS LHV + HE
Sbjct: 357 RGMRYCPSNFVLHVRYAEHE 376
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 74 SQHLHRMPC*NPDRRSGSS*LVILALWHPLVLE 172
S +LH C NP+ S S ++ AL HP E
Sbjct: 538 SDNLHGESCNNPNANSVHSAQLLQALLHPSATE 570
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,613
Number of Sequences: 5004
Number of extensions: 50092
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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