Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H17
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890... 33 0.13
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 31 0.71
12_02_0651 + 21522089-21522128,21522472-21522593,21523386-215235... 30 1.2
05_05_0026 + 21645845-21647404 29 2.9
02_04_0040 + 19141673-19142560 29 2.9
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 29 2.9
12_02_1179 - 26720533-26721021,26721329-26722597 29 3.8
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 29 3.8
12_01_0160 - 1212295-1213586,1213828-1213976,1214288-1214445,121... 27 8.8
11_01_0161 - 1327286-1328592,1328819-1329000,1329279-1329436,132... 27 8.8
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 27 8.8
08_02_1597 + 28128956-28129095,28129115-28129562 27 8.8
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 27 8.8
01_05_0674 - 24187820-24188713,24188809-24189204 27 8.8
>11_03_0008 +
8901817-8902146,8903058-8903120,8903226-8903321,
8903924-8903971,8904558-8904629,8905373-8905431,
8905582-8905672,8905749-8905886
Length = 298
Score = 33.5 bits (73), Expect = 0.13
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 10 PTGPPSQPSELLKFLAINALELSAPASDALLKSRSSEWFQLAGH---PGSLAPAGPGTVW 180
P P P LL L+++ SA SD LL E F+ AG PG APA
Sbjct: 4 PRRPRLLPLLLLLALSLSLAAASAFQSDELLLHDDDE-FEGAGARPTPGPPAPAAAAVSS 62
Query: 181 KRRAPGDHPAHNPERDAYE 237
RR PGD A E A +
Sbjct: 63 SRRRPGDSSAAAAESSAVQ 81
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 31.1 bits (67), Expect = 0.71
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 244 LELHTHHVPDYELDD-PPERDVSIRFQDQRVPESQDDQLAGT 122
L+ H HH+P DD PP V F Q VP + + GT
Sbjct: 513 LQAHYHHIPGVFTDDFPPMPPVFFDFTSQNVPRALWQPVKGT 554
>12_02_0651 +
21522089-21522128,21522472-21522593,21523386-21523544,
21523653-21523730,21523821-21523865,21524121-21524187,
21524261-21524322,21524407-21524546,21524752-21524878,
21524957-21525071,21525210-21525298,21525533-21525616,
21525857-21526219,21526300-21526689,21526835-21526894,
21527530-21527553
Length = 654
Score = 30.3 bits (65), Expect = 1.2
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = +1
Query: 16 GPPSQPSELLKFLAINALE-----LSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVW 180
G +PS+ ++ L + E SAP D LL S +LA H + AP +
Sbjct: 368 GNRKEPSDKVEILVVLQNEHSFSRRSAPDVDPLLYEYSPSTKELASHLNNCAPLYSNSSV 427
Query: 181 KRRAPGDHPAHNPERDAY-EALAACPHMRAVIPRYYRELE 297
R + H P R+ E L P++ A + R + + E
Sbjct: 428 ARHSLASTVEHPPRRELLSEPLLQNPNLGASLHRQFHQSE 467
>05_05_0026 + 21645845-21647404
Length = 519
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Frame = +1
Query: 163 GPGTVWKRRAPGDHPAHNPERDAYEALAACPHMRA-VIPRYYRELEYGGERFIELQDLLH 339
G G +++R+ A +P A+ A +R +IP YG ER ++LQD+
Sbjct: 138 GDGWLFQRKLAAAELA-SPAIRAFAANVVASELRCRLIPLLRSASSYGSERLLDLQDVFR 196
Query: 340 GFRDPHVMDVKMGTRTFLEDEVSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLR 510
F + + G + A +D ++ L T H + +LR
Sbjct: 197 RFAFDCICKISFGLDPGCLELSLPISAFADAFDTASMLSARRATVPMHVVWKLKRLR 253
>02_04_0040 + 19141673-19142560
Length = 295
Score = 29.1 bits (62), Expect = 2.9
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Frame = +1
Query: 127 QLAGHPGSLAPAGP-----GTVWKRRAPGDHPAHNPE-RDAYEALAACP-HMR-AVIPRY 282
Q+AGH S GP G +K G+ H A+ A A P +R A PR+
Sbjct: 11 QVAGHRASADKLGPLVDGEGLFYKPLQAGERGEHEAAFYAAFTAHPAVPPRVRGAFFPRF 70
Query: 283 Y------RELEYGGERF--IELQDLLHGFRDPHVMDVKMGTRTF 390
+ GG + I L DLL G P V DVK+G T+
Sbjct: 71 HGTRFLPAPASPGGAPYPHIVLDDLLAGLPSPCVADVKIGACTW 114
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +1
Query: 169 GTVWKRRAPGDHPAHNPERDAYEALAACPHMRAVIPRYYRELEYGGERFIEL 324
G W+R HPA N ++ + ++ + +++ R+ +++ G +EL
Sbjct: 148 GEDWERHRKVVHPAFNHDKLKFMSVVMAESVESMVQRWQSQIQQAGNNQVEL 199
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 134 LVILALWHPLVLEPYGNVALRGIIQLI 214
+V+L +PL+LEPYG +R +Q++
Sbjct: 178 VVVLLTQNPLMLEPYGRSLIRSGLQIL 204
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +1
Query: 442 MVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVKMPGQ 588
+++LDP P E +++ V + + + K+ ++E+G R+ +VK P +
Sbjct: 516 IIKLDPEIPLEEQNDVVIVRSGKSQERKLKRMKASEKGSRV-SVKTPSR 563
>12_01_0160 -
1212295-1213586,1213828-1213976,1214288-1214445,
1214860-1215004,1215102-1215226
Length = 622
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 151 LAPAGPGTVWKRRAPGDHPAHNPERDAYE 237
L P P T KRR+ D P+ N E A+E
Sbjct: 289 LEPLEPETKLKRRSNRDKPSFNQEASAFE 317
>11_01_0161 -
1327286-1328592,1328819-1329000,1329279-1329436,
1329852-1329996,1330083-1330207
Length = 638
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 151 LAPAGPGTVWKRRAPGDHPAHNPERDAYE 237
L P P T KRR+ D P+ N E A+E
Sbjct: 300 LEPLEPETKLKRRSNRDKPSFNQEASAFE 328
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -3
Query: 525 TELHITQLSDSARFMFCLGRCIRIETHHLFIEIRACMRIAYFIFKE 388
+++ +T DS+ ++ GR + +E R C +AY +E
Sbjct: 256 SDIWVTITGDSSHYILFYGRAVYVEEDDTIYFSRGCSLVAYKFLRE 301
>08_02_1597 + 28128956-28129095,28129115-28129562
Length = 195
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -1
Query: 116 DDRDFNKASDAGAESSNALIAKNLSSSEGCEGG 18
DDRD+ + D G + ++S GC GG
Sbjct: 21 DDRDYGGSGDVGGGEGVGCEVRMATASSGCGGG 53
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 67 LELSAPASDALLKSRSSEWFQLAGH-PGSLAPAGPGTVWKRRAPGDHPAHNP 219
+E SA S K R E + AG P + AP G GT+ R P HP P
Sbjct: 63 VEESAGVSSNKKKRRIEE--ETAGESPATGAPEGHGTLASRPLPPTHPPPTP 112
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +1
Query: 142 PGSLAP-AGPGTVWKRRAPGDHPAHNPERDAYEALAACPHMRAVIPR 279
PG+ P A P RRAP H P D + A H A I R
Sbjct: 137 PGAREPTARPNAAANRRAPAAAAKHRPAADQFAPPPAPSHQWAKIKR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,405,084
Number of Sequences: 37544
Number of extensions: 370478
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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