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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H17
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertilit...   171   3e-43
U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertilit...   171   3e-43
U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertilit...   171   3e-43
AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol tris...   171   3e-43
AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol tris...   171   3e-43
AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol tris...   171   3e-43
AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical ...    31   0.85 
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   2.6  
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   2.6  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical ...    29   3.4  
U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen pro...    28   6.0  
AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like ...    28   6.0  
Z81072-2|CAB03023.2|  332|Caenorhabditis elegans Hypothetical pr...    27   7.9  
L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical pr...    27   7.9  
L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U88314-4|AAK71360.1|  494|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform a protein.
          Length = 494

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 174 VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 228

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 229 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 288

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 289 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 346


>U88314-3|AAK71361.1|  394|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform b protein.
          Length = 394

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 74  VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 128

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 129 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 188

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 189 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 246


>U88314-2|AAF99884.2|  461|Caenorhabditis elegans Let-23 fertility
           effector/regulatorprotein 2, isoform c protein.
          Length = 461

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 141 VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 195

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 196 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 255

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 256 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 313


>AF045613-1|AAC38962.1|  461|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 3 protein.
          Length = 461

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 141 VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 195

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 196 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 255

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 256 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 313


>AF045612-1|AAC38961.1|  394|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 2 protein.
          Length = 394

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 74  VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 128

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 129 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 188

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 189 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 246


>AF045611-1|AAC38960.1|  494|Caenorhabditis elegans inositol
           trisphosphate 3-kinaseform 1 protein.
          Length = 494

 Score =  171 bits (417), Expect = 3e-43
 Identities = 86/178 (48%), Positives = 119/178 (66%), Gaps = 3/178 (1%)
 Frame = +1

Query: 52  LAINALELSAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNPERDA 231
           +++  + ++A   D  LK R  +W QL+GH GS+ PA P T++K++      A+  E  A
Sbjct: 174 VSVETMAITALPMDVWLKERLKKWVQLSGHEGSIVPATPHTLYKKQC-----ANCGEGRA 228

Query: 232 YEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPH---VMDVKMGTRTFLEDE 402
           Y+ ++  P +    P+YY ELE   E FIE++DLL  F DP    +MD+K+GTRTFLE E
Sbjct: 229 YKNISKDPALDGFTPKYYDELEKNEEHFIEIEDLLQQFHDPTKTAIMDIKIGTRTFLESE 288

Query: 403 VSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVK 576
           VSN   R+DLYEKMV +D + PTE E +  A+TKLRYMQFRE++SS+A+ GFRIEA K
Sbjct: 289 VSNTKKRADLYEKMVAIDNDEPTEEERKCGAITKLRYMQFRERESSTAQLGFRIEAAK 346


>AC084154-3|AAK29869.1|  323|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.6 protein.
          Length = 323

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 307 ERFIELQDLLHGFRDPHVMDVKMGTR 384
           + FI L DL +  + P ++D+K+GTR
Sbjct: 115 KNFIVLSDLTYRMKSPRILDLKLGTR 140


>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
           protein W10C6.1 protein.
          Length = 1461

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +1

Query: 154 APAGPGTVWKRRAPGDHPAHNPERDAYEALAACPHMRAVIPRYYR-----ELEYGGERFI 318
           +P G G    R    D    +  R  +E +   P    +    Y+     EL+  GE F+
Sbjct: 303 SPEGHGGKQMRPRMSDSEVLSMMRQFFEEMTFRPKSEVITEDGYKCHLSVELDPNGEGFV 362

Query: 319 ELQDLLHGF 345
             QDLLH F
Sbjct: 363 HTQDLLHAF 371


>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
 Frame = +1

Query: 7   GPTGPPSQPSELLKFLAINALELSAPA-SDALLKSRSSEWFQLAGHPGSLAPAGPGTVWK 183
           GPTGPP+ P    K       +  +PA  +      +     L+   GS+  + P    K
Sbjct: 638 GPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDPENDTIVTLSEVFGSM--SNPKPARK 695

Query: 184 RRAPGDHPAHNPERDAYEALAACPH-MRAVIPRYYRELEYGGERF 315
            RAP    A   + +  E    CP  MRAV     +E    G++F
Sbjct: 696 PRAPRKSAAPKEQEEEEEVFCQCPEPMRAVTKVVQKEGPNKGKKF 740


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
 Frame = +1

Query: 7   GPTGPPSQPSELLKFLAINALELSAPA-SDALLKSRSSEWFQLAGHPGSLAPAGPGTVWK 183
           GPTGPP+ P    K       +  +PA  +      +     L+   GS+  + P    K
Sbjct: 638 GPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDPENDTIVTLSEVFGSM--SNPKPARK 695

Query: 184 RRAPGDHPAHNPERDAYEALAACPH-MRAVIPRYYRELEYGGERF 315
            RAP    A   + +  E    CP  MRAV     +E    G++F
Sbjct: 696 PRAPRKSAAPKEQEEEEEVFCQCPEPMRAVTKVVQKEGPNKGKKF 740


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical protein
            B0207.5 protein.
          Length = 3279

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
 Frame = +1

Query: 364  DVKMGTRTFLE---DEVSNAHARSDLYEKMV--RLDPNAPTEAEHEARAVTKLRYMQFRE 528
            D++  TR  +E   D+      +S   + ++  R+    P E EHE R V KL+ M+F  
Sbjct: 2376 DIREVTRKIVEGEEDDFKGVRLKSHRKKLVIVRRMQEEEPEE-EHEVRVVKKLKVMKFGN 2434

Query: 529  KQSSSAEQGFRIE 567
            ++  + +    +E
Sbjct: 2435 EEKENFDNEENVE 2447


>AF100673-3|ABA00151.1|  950|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2c protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 226 HVPDYELDDPPERDVSIRFQDQRVPES 146
           HV DY++  P E  V+++F DQ +P+S
Sbjct: 601 HV-DYKVATPGEYVVAVKFNDQHIPDS 626


>AF100673-2|AAU05553.1|  899|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2b protein.
          Length = 899

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 226 HVPDYELDDPPERDVSIRFQDQRVPES 146
           HV DY++  P E  V+++F DQ +P+S
Sbjct: 550 HV-DYKVATPGEYVVAVKFNDQHIPDS 575


>AF100673-1|AAP13733.1|  897|Caenorhabditis elegans Hypothetical
           protein Y66H1B.2a protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 226 HVPDYELDDPPERDVSIRFQDQRVPES 146
           HV DY++  P E  V+++F DQ +P+S
Sbjct: 548 HV-DYKVATPGEYVVAVKFNDQHIPDS 573


>U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical
           protein T20F7.3 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 313 FIELQDLLHGFRDPHVMDVKMGTRT---FLEDEVSNAHARSDL 432
           ++ ++D  H    P ++D+K+GTRT   ++ +E    H +  L
Sbjct: 106 YLLMKDEAHAAVSPRILDLKLGTRTHSDYISEEKKINHIKKSL 148


>AL032630-4|CAA21561.1|  212|Caenorhabditis elegans Hypothetical
           protein Y62H9A.4 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 76  SAPASDALLKSRSSEWFQLAGHPGSLAPAGPGTVWKRRAPGDHPAHNP-ERDAYEALAAC 252
           S+ +S+  LKSRS+   +   +PG  AP  P T +        P +N  E++ YE     
Sbjct: 43  SSDSSENELKSRSNSDERYPEYPGVYAPQPPATNYGTNGNEYRPPNNVYEQNEYEQCKEI 102

Query: 253 PH 258
            H
Sbjct: 103 KH 104


>Z81048-1|CAB02839.1|  587|Caenorhabditis elegans Hypothetical
           protein C41G7.2 protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
 Frame = +1

Query: 220 ERDAYEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPHVMDVKMGTRTFLED 399
           ER+  EA     H ++ I     +LE    + I LQD L   ++ H    K       E 
Sbjct: 162 EREMAEATDFAEHQKSKIQFLDGKLEGADRKLISLQDQLSTLKEVH----KSKMEECEEY 217

Query: 400 EVSNAHARSDLYEKMVRLDP--NAPTEAEHEARAVTKLR-YMQFREKQSSSAEQGFRIEA 570
            V N   R  L EK   L    N   +   + R   ++R  ++     SSSA +   ++A
Sbjct: 218 RVHNNDLRDLLNEKEAELRKLHNDVVDLRGQIRVAVRVRPLIKSEVDTSSSAIEYPAVDA 277

Query: 571 VKM 579
           +K+
Sbjct: 278 IKI 280


>AF067616-11|AAC19194.2|  627|Caenorhabditis elegans Collagen
           protein 99 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
 Frame = +1

Query: 4   RGPTGPPSQPSELLKFLAINALELSAPASDAL---------LKSRSSEWFQLAGHPGSLA 156
           RGP GPP  P     +     + LS    +++         L S   +  QL G PG   
Sbjct: 37  RGPVGPPGLPGLPAPYYRRPRVPLSNNLDESISRKMRAFGMLYSPDGQAIQLRGMPGPPG 96

Query: 157 PAGP 168
           PAGP
Sbjct: 97  PAGP 100


>AB033380-1|BAA92264.1|  587|Caenorhabditis elegans kinesin like
           protein protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 32/123 (26%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
 Frame = +1

Query: 220 ERDAYEALAACPHMRAVIPRYYRELEYGGERFIELQDLLHGFRDPHVMDVKMGTRTFLED 399
           ER+  EA     H ++ I     +LE    + I LQD L   ++ H    K       E 
Sbjct: 162 EREMAEATDFAEHQKSKIQFLDGKLEGADRKLISLQDQLSTLKEVH----KSKMEECEEY 217

Query: 400 EVSNAHARSDLYEKMVRLDP--NAPTEAEHEARAVTKLR-YMQFREKQSSSAEQGFRIEA 570
            V N   R  L EK   L    N   +   + R   ++R  ++     SSSA +   ++A
Sbjct: 218 RVHNNDLRDLLNEKEAELRKLHNDVVDLRGQIRVAVRVRPLIKSEVDTSSSAIEYPAVDA 277

Query: 571 VKM 579
           +K+
Sbjct: 278 IKI 280


>Z81072-2|CAB03023.2|  332|Caenorhabditis elegans Hypothetical
           protein F30A10.3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 268 VIPRYYRELEYGGERFIELQDLLHGFRDPHVMDVKMGTRTFLED 399
           V+ R  +ELE     F+ L++++  +  P V+D+K+GTR   +D
Sbjct: 119 VVERMLKELE--PTPFLLLENVVAHYTRPCVLDLKIGTRQHGDD 160


>L14429-2|AAP68927.1|  229|Caenorhabditis elegans Hypothetical
           protein ZK652.6b protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 400 EVSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVKM 579
           E++ A  R+    + V  DP  P  A  EA     L++++  EK +   E     E V M
Sbjct: 92  EIALALIRASCLHEPVFTDPTKPDIALKEA-----LQHLRLGEKPAKMMEYQAAEELVNM 146

Query: 580 PGQPPLT 600
           P + P+T
Sbjct: 147 PERDPIT 153


>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 400 EVSNAHARSDLYEKMVRLDPNAPTEAEHEARAVTKLRYMQFREKQSSSAEQGFRIEAVKM 579
           E++ A  R+    + V  DP  P  A  EA     L++++  EK +   E     E V M
Sbjct: 438 EIALALIRASCLHEPVFTDPTKPDIALKEA-----LQHLRLGEKPAKMMEYQAAEELVNM 492

Query: 580 PGQPPLT 600
           P + P+T
Sbjct: 493 PERDPIT 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.133    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,046,323
Number of Sequences: 27780
Number of extensions: 298743
Number of successful extensions: 1196
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)

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