Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H16
         (465 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    25   0.26 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   4.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   7.4  

>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 0.26
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 459 CLVWNCLTCGRRHAAALITSTLMICIEC 376
           CL+ NC   G+R   A+  + +  C+ C
Sbjct: 21  CLITNCPRGGKRSKFAISENAVKPCVSC 48


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 297 RYILWTPERDS*RNQIPKFLILTGLFSGISLMDTIS 190
           R++ + PE     N   +FL  TG    ISL+D IS
Sbjct: 497 RFLFYKPEDIFRPNTYNRFLAATGGDHVISLIDEIS 532


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5  HEEMKAKGELKEYEVIGRKLPSESEP 82
          HE+      L  Y V+ R + +ESEP
Sbjct: 3  HEKRLLNNLLGPYNVLERPVANESEP 28


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5  HEEMKAKGELKEYEVIGRKLPSESEP 82
          HE+      L  Y V+ R + +ESEP
Sbjct: 3  HEKRLLNNLLGPYNVLERPVANESEP 28


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5  HEEMKAKGELKEYEVIGRKLPSESEP 82
          HE+      L  Y V+ R + +ESEP
Sbjct: 3  HEKRLLNNLLGPYNVLERPVANESEP 28


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5  HEEMKAKGELKEYEVIGRKLPSESEP 82
          HE+      L  Y V+ R + +ESEP
Sbjct: 3  HEKRLLNNLLGPYNVLERPVANESEP 28


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5  HEEMKAKGELKEYEVIGRKLPSESEP 82
          HE+      L  Y V+ R + +ESEP
Sbjct: 3  HEKRLLNNLLGPYNVLERPVANESEP 28


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 424 TCRCLDYFHSD 392
           TCRC DY + D
Sbjct: 176 TCRCKDYKNED 186


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 65  PSESEPKPPLYKMR 106
           P+E+ P  P YK++
Sbjct: 437 PTENSPTKPYYKLK 450


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,851
Number of Sequences: 336
Number of extensions: 2224
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)