Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H16
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 177 7e-46
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 177 7e-46
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 30 0.20
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 4.3
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 4.3
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 5.7
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 7.5
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 7.5
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 24 9.9
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch... 24 9.9
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 177 bits (431), Expect = 7e-46
Identities = 83/139 (59%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Frame = +2
Query: 32 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
LKEY+V+GRK+P+E EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV+I E
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
I E P+K K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 392 IR-VEVIKAAACRRPQVKQ 445
++ VEV K RR VKQ
Sbjct: 123 LKVVEVEKKEDVRRNYVKQ 141
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 177 bits (431), Expect = 7e-46
Identities = 83/139 (59%), Positives = 105/139 (75%), Gaps = 1/139 (0%)
Frame = +2
Query: 32 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 211
LKEY+V+GRK+P+E EP P L++MR+F+P+ VAKSR+WYFL+ + K KK TGEIV+I E
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINE 62
Query: 212 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 391
I E P+K K FGIW+RY+SRSG HNMY+E+RD + GAV Y DM ARHRAR SI+I
Sbjct: 63 ISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRI 122
Query: 392 IR-VEVIKAAACRRPQVKQ 445
++ VEV K RR VKQ
Sbjct: 123 LKVVEVEKKEDVRRNYVKQ 141
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 29.9 bits (64), Expect = 0.20
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 2 RHEEMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWY 151
+HE A +E V+ + E P +R +SP+ ++ S FWY
Sbjct: 459 KHERQMADTCYQEILVLKSSIEKEKVEIVPFLDIRKYSPNEVLCMSPFWY 508
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 4.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 119 DPIVAKSRFWYFLRQLKKFK 178
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 292 HIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLF 176
H+V+ + LNL F NF+DG TS+ F
Sbjct: 282 HVVEEVSEEYNDKTVVYLNLLCDSFHNFMDGLAITSAFF 320
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.0 bits (52), Expect = 5.7
Identities = 7/24 (29%), Positives = 12/24 (50%)
Frame = +2
Query: 86 PPLYKMRIFSPDPIVAKSRFWYFL 157
PP + P + K +FWY++
Sbjct: 534 PPKSNAELVDPSTLSGKDKFWYYI 557
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 177 LNFFNCLKKYQKRDF 133
+N C+KKY RDF
Sbjct: 111 INLIECMKKYNVRDF 125
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 182 TTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYR 298
T+G +S P K++ I R S SGVH++ R
Sbjct: 458 TSGASISNTSSPHSEASISKDYEILKRRRSNSGVHSLTR 496
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 145 LVFLEAVEEVQKDYW*NCIHQGNSRKESC 231
L+ LEA+E D+ +H G+ KE C
Sbjct: 256 LLLLEAIETYGDDWNQIALHVGSRTKEQC 284
>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 276 ERDS*RNQIPKFLILTGLFSGISLMDTISPVVFLNFFNCLKKYQKR 139
ER S + + FL+L G + + +SP +F C KY+ +
Sbjct: 43 ERASRPSILVTFLVLAGTILSLYIWPILSPDLFFANQRCSFKYKNK 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,215
Number of Sequences: 5004
Number of extensions: 35793
Number of successful extensions: 97
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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