Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H16
(465 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 231 9e-61
BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 231 9e-61
BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 231 9e-61
BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 231 9e-61
AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 231 9e-61
AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 231 9e-61
AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 205 5e-53
X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 142 5e-34
AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 65 1e-10
U83115-1|AAB53791.1| 1637|Homo sapiens non-lens beta gamma-cryst... 31 2.6
AL390074-1|CAH72091.1| 1723|Homo sapiens absent in melanoma 1 pr... 31 2.6
AL359292-2|CAI21046.1| 1723|Homo sapiens absent in melanoma 1 pr... 31 2.6
U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine dehydro... 29 6.0
U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine dehydro... 29 6.0
BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 6.0
BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 6.0
BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 6.0
AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 6.0
AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine dehyd... 29 6.0
BC031010-1|AAH31010.1| 428|Homo sapiens SMYD3 protein protein. 29 7.9
BC017079-1|AAH17079.2| 287|Homo sapiens SMYD3 protein protein. 29 7.9
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 29 7.9
AY186742-1|AAO31695.1| 258|Homo sapiens hypothetical protein FL... 29 7.9
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 7.9
AL512412-3|CAI14746.1| 428|Homo sapiens SET and MYND domain con... 29 7.9
AL512412-2|CAI14745.1| 258|Homo sapiens SET and MYND domain con... 29 7.9
AL512412-1|CAI14744.1| 239|Homo sapiens SET and MYND domain con... 29 7.9
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 7.9
AL445468-3|CAI16630.1| 428|Homo sapiens SET and MYND domain con... 29 7.9
AL445468-2|CAI16629.1| 258|Homo sapiens SET and MYND domain con... 29 7.9
AL445468-1|CAI16628.1| 239|Homo sapiens SET and MYND domain con... 29 7.9
AL359292-1|CAC44021.1| 316|Homo sapiens absent in melanoma 1 pr... 29 7.9
AL358859-1|CAI15419.1| 428|Homo sapiens SET and MYND domain con... 29 7.9
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 7.9
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 7.9
AL356583-1|CAI16395.1| 428|Homo sapiens SET and MYND domain con... 29 7.9
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 29 7.9
AK024733-1|BAB14981.1| 369|Homo sapiens protein ( Homo sapiens ... 29 7.9
AB057595-1|BAB86333.1| 428|Homo sapiens histone methyltransfera... 29 7.9
>L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a
variant protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a
protein.
Length = 176
Score = 231 bits (565), Expect = 9e-61
Identities = 103/146 (70%), Positives = 124/146 (84%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
IV ++ EKSP+++KNFGIWLRY+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
AHSIQI++VE I A+ CRRP VKQFH
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFH 146
>AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein
L18a-like protein protein.
Length = 136
Score = 205 bits (501), Expect = 5e-53
Identities = 92/135 (68%), Positives = 113/135 (83%)
Frame = +2
Query: 14 MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
MKA G L+EY+V+GR+LP+ PPLY+MRIF+P+ +VAKSRFWYF+ QLKK KK++GE
Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
V ++ EKSP+++KNFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGARHRAR
Sbjct: 61 TVYCGQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120
Query: 374 AHSIQIIRVEVIKAA 418
AHSIQI+ VE I A+
Sbjct: 121 AHSIQIMMVEEIAAS 135
>X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for
ORF. ).
Length = 140
Score = 142 bits (344), Expect = 5e-34
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 209 EIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQ 388
++ EKSP+++KNFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGARHRARAHSIQ
Sbjct: 30 QVFEKSPLRVKNFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQ 89
Query: 389 IIRVEVIKAAACRRPQVKQFH 451
I++VE I + CRRP VKQFH
Sbjct: 90 IMKVEEIAVSKCRRPAVKQFH 110
>AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a
protein.
Length = 66
Score = 65.3 bits (152), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +2
Query: 344 RDMGARHRARAHSIQIIRVEVIKAAACRRPQVKQFH 451
RDMGARHRARAHSIQI++VE I A+ CRRP VKQFH
Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFH 36
>U83115-1|AAB53791.1| 1637|Homo sapiens non-lens beta gamma-crystallin
like protein protein.
Length = 1637
Score = 30.7 bits (66), Expect = 2.6
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +2
Query: 26 GELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSI 205
G ++ ++ GRK+ ++PK +Y+ F + ++ F+ + + ++ TG+
Sbjct: 1114 GSMRPLKMGGRKVEFPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGD---- 1169
Query: 206 KEIPEKSPVKIKNF-GIWLRYESRSGVHNMY----REYRDLSVGG 325
+P S +K GIW+ YE + Y EYRD G
Sbjct: 1170 DHLPFTSVGSMKVLRGIWVAYEKPGFTGHQYLLEEGEYRDWKAWG 1214
>AL390074-1|CAH72091.1| 1723|Homo sapiens absent in melanoma 1
protein.
Length = 1723
Score = 30.7 bits (66), Expect = 2.6
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +2
Query: 26 GELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSI 205
G ++ ++ GRK+ ++PK +Y+ F + ++ F+ + + ++ TG+
Sbjct: 1200 GSMRPLKMGGRKVEFPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGD---- 1255
Query: 206 KEIPEKSPVKIKNF-GIWLRYESRSGVHNMY----REYRDLSVGG 325
+P S +K GIW+ YE + Y EYRD G
Sbjct: 1256 DHLPFTSVGSMKVLRGIWVAYEKPGFTGHQYLLEEGEYRDWKAWG 1300
>AL359292-2|CAI21046.1| 1723|Homo sapiens absent in melanoma 1
protein.
Length = 1723
Score = 30.7 bits (66), Expect = 2.6
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Frame = +2
Query: 26 GELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSI 205
G ++ ++ GRK+ ++PK +Y+ F + ++ F+ + + ++ TG+
Sbjct: 1200 GSMRPLKMGGRKVEFPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGD---- 1255
Query: 206 KEIPEKSPVKIKNF-GIWLRYESRSGVHNMY----REYRDLSVGG 325
+P S +K GIW+ YE + Y EYRD G
Sbjct: 1256 DHLPFTSVGSMKVLRGIWVAYEKPGFTGHQYLLEEGEYRDWKAWG 1300
>U20938-1|AAB51366.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>U09178-1|AAA57474.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>BX908805-1|CAI15125.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>BC131778-1|AAI31779.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>BC131777-1|AAI31778.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>AL356457-3|CAH70570.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>AB003063-1|BAA89789.1| 1025|Homo sapiens dihydropyrimidine
dehydrogenase protein.
Length = 1025
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 88 SSIQNEDF-LS*SYCGKISFLVFLEAVEEVQ 177
S+IQN+DF + YC + L++L+++EE+Q
Sbjct: 817 SAIQNQDFTVIEDYCTGLKALLYLKSIEELQ 847
>BC031010-1|AAH31010.1| 428|Homo sapiens SMYD3 protein protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>BC017079-1|AAH17079.2| 287|Homo sapiens SMYD3 protein protein.
Length = 287
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 76 NGPHLLLRAVRDIEVGEELTICYLDM 101
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AY186742-1|AAO31695.1| 258|Homo sapiens hypothetical protein
FLJ21080 protein.
Length = 258
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 47 NGPHLLLRAVRDIEVGEELTICYLDM 72
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AL512412-3|CAI14746.1| 428|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>AL512412-2|CAI14745.1| 258|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 258
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 47 NGPHLLLRAVRDIEVGEELTICYLDM 72
>AL512412-1|CAI14744.1| 239|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 239
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 28 NGPHLLLRAVRDIEVGEELTICYLDM 53
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AL445468-3|CAI16630.1| 428|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>AL445468-2|CAI16629.1| 258|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 258
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 47 NGPHLLLRAVRDIEVGEELTICYLDM 72
>AL445468-1|CAI16628.1| 239|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 239
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 28 NGPHLLLRAVRDIEVGEELTICYLDM 53
>AL359292-1|CAC44021.1| 316|Homo sapiens absent in melanoma 1
protein.
Length = 316
Score = 29.1 bits (62), Expect = 7.9
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Frame = +2
Query: 11 EMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTG 190
EM A G E GRK+ ++PK +Y+ F + ++ F+ + + ++ TG
Sbjct: 15 EMSALGTAFSREG-GRKVEFPTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATG 73
Query: 191 EIVSIKEIPEKSPVKIKNF-GIWLRYESRSGVHNMY----REYRDLSVGG 325
+ +P S +K GIW+ YE + Y EYRD G
Sbjct: 74 D----DHLPFTSVGSMKVLRGIWVAYEKPGFTGHQYLLEEGEYRDWKAWG 119
>AL358859-1|CAI15419.1| 428|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AL356583-1|CAI16395.1| 428|Homo sapiens SET and MYND domain
containing 3 protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.1 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 213 ISLMDTISPVVFLNFFNCLKKYQKRDFATIGSGEKILILYRGGFGSLSEGSLRPMTSYSF 34
++L S V +N CL D A G +++Y+G S+ EG L+P T Y +
Sbjct: 1874 VNLASVSSGAVRVNLDGCLST----DSAVNCRGNDSILVYQGKEQSVYEGGLQPFTEYLY 1929
>AK024733-1|BAB14981.1| 369|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21080 fis, clone CAS02449. ).
Length = 369
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 158 NGPHLLLRAVRDIEVGEELTICYLDM 183
>AB057595-1|BAB86333.1| 428|Homo sapiens histone methyltransferase
protein.
Length = 428
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 275 SGVHNMYREYRDLSVGGAVTQCYRDM 352
+G H + R RD+ VG +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,963,803
Number of Sequences: 237096
Number of extensions: 1294962
Number of successful extensions: 2952
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2952
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3986009860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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