Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H16
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   197   4e-51
AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    30   0.94 
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    27   8.8  
AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.      27   8.8  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    27   8.8  
AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast m...    27   8.8  
AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast m...    27   8.8  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  197 bits (480), Expect = 4e-51
 Identities = 85/146 (58%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
 Frame = +2

Query: 17  KAKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
           KA GE L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
           I+SIK++ EK+P  +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 374 AHSIQIIRVEVIKAAACRRPQVKQFH 451
           A  I I++V+ +KA   +R  +K FH
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFH 149


>AL132860-14|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 8   EEMKAKGELKEYEVIGRKLPSESEPK-PPLYKMRIFSPDPIVAKSRFWY 151
           E++   G  +E  ++    PS S P  PP Y+ +      IV  S FW+
Sbjct: 67  EDLNLPGTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
            C35C5.6 protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 225  LFSGISLM-DTISPVVFLNFFNCLKKYQKRDFATIGSGEKILI 100
            L S +SL+   + P + L+FF   K+Y   D  T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122


>Z69787-6|CAA93637.1|  341|Caenorhabditis elegans Hypothetical
           protein C44C10.7 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 188 GEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 325
           G I+    +   +PVKI +FGI  R+ +R G H +    RD+   G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 392 IRVEVIKAAACRRPQVKQFHTRQD 463
           + +  +K A C+ P    FHT++D
Sbjct: 926 VGLSALKDATCKNPTTSDFHTKED 949


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 392 IRVEVIKAAACRRPQVKQFHTRQD 463
           + +  +K A C+ P    FHT++D
Sbjct: 926 VGLSALKDATCKNPTTSDFHTKED 949


>U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK430.7 protein.
          Length = 444

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 298 TVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFT 188
           +++++DTR  +  +  T  +  N+ + WN ++ YNFT
Sbjct: 217 SIYVLDTRQDVPLKKVTMKMRPNK-ISWNPMEAYNFT 252


>AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.3 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 158 RQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYR 307
           R+L KF+  +G+ V +  + E S      FG  + +    G HN ++  R
Sbjct: 8   RKLVKFETESGKKVELDAVYEDSLTSGSPFGTVVAFHGSPGSHNDFKYIR 57


>Z92827-4|CAB07323.1|  722|Caenorhabditis elegans Hypothetical
           protein C29F7.5 protein.
          Length = 722

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 20  AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSR 142
           AKG +K    IG+K+  E  PK P  + + F+      KS+
Sbjct: 146 AKGTIKRSAPIGKKVQKEKVPKNPKKEKKDFTGGDKKKKSK 186


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 167 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVG 322
           KKF   TGE +    + EK     K   +W      S VH ++ ++ +L+VG
Sbjct: 506 KKFSSYTGESLEGHALVEKIMAHAKTGILWFFDNYNSSVHFIFDDF-ELNVG 556


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 170 KFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 331
           K KK         E   K   +I N   W+R+    G+  + +EY+D   GG++
Sbjct: 235 KLKKKKSVTCDEAEFSGKKKKEIIN--AWIRHVLSIGIEGLKKEYQDSPNGGSI 286


>AF239999-1|AAF63495.1|  203|Caenorhabditis elegans MDF-2 protein.
          Length = 203

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V  KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +2

Query: 230 VKIKNFGIWLRYESR---SGVHNMYR 298
           V +K+FGI LRY S+   S VH  Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146


>AC084158-32|AAM15619.1|  116|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform b
           protein.
          Length = 116

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V  KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


>AC084158-31|AAK68576.1|  203|Caenorhabditis elegans Mad (yeast
           mitosis arrest deficient)related protein 2, isoform a
           protein.
          Length = 203

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 98  KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
           K++ F  DP++ +  +W   RQLK+      E V  KE+ E+
Sbjct: 59  KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,315,239
Number of Sequences: 27780
Number of extensions: 207225
Number of successful extensions: 689
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)