Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H16
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.23 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.23 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.40 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   6.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   8.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.6  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.6  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 253 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 125
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 300 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 345


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.8 bits (54), Expect = 0.23
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 253 DTKVLNLNRTLFWNFLDGYNFTSSLFELL---QLPQEIPETRFCHN 125
           +TK+++ N   + N+ + YN     + ++   Q+P  +P   +C N
Sbjct: 311 ETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQIPVPVPVPIYCGN 356


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 322 TYTQVTVFTVHIVDTRARLVTQPDTKVLNLNRTLFWNF 209
           TYT  T+  ++IV      +TQ D ++ N  + + + F
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQSDIELANTFKAIIYGF 537


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 2   RHEEMKAKGELKEYEVIGRKLPSESEP 82
           RHE+      L  Y  + R + +ESEP
Sbjct: 53  RHEKRLLNELLSSYNTLERPVANESEP 79


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 2   RHEEMKAKGELKEYEVIGRKLPSESEP 82
           RHE+      L  Y  + R + +ESEP
Sbjct: 53  RHEKRLLNELLSSYNTLERPVANESEP 79


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 5   HEEMKAKGELKEYEVIGRKLPSESEP 82
           HE+      L  Y V+ R + +ESEP
Sbjct: 23  HEKRLLNDLLDTYNVLERPVGNESEP 48


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 173 FKKTTGEIVSIKEIPEKSPVKI 238
           +KK    I++I++IP   PV I
Sbjct: 349 YKKLYYNIINIEQIPVPVPVPI 370


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 46  PVYIPQPRPPHPRLRRE 62



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 74  PVYIPQPRPPHPRLRRE 90



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 130 PVYIPQPRPPHPRLRRE 146



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 186 PVYIPQPRPPHPRLRRE 202



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 214 PVYIPQPRPPHPRLRRE 230



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 242 PVYIPQPRPPHPRLRRE 258


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 47  PVYIPQPRPPHPRLRRE 63



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 75  PVYIPQPRPPHPRLRRE 91



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 103 PVYIPQPRPPHPRLRRE 119


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 103 PVYIPQPRPPHPRLRRE 119



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 129 PVYIPQPRPPHPRLRRE 145


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)
 Frame = -3

Query: 463 ILPGVELLNLWSTTCRCLDY 404
           ++  +  +N+W   C C  Y
Sbjct: 356 VVSNLTAMNVWDGVCMCFIY 375


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)
 Frame = -3

Query: 463 ILPGVELLNLWSTTCRCLDY 404
           ++  +  +N+W   C C  Y
Sbjct: 325 VVSNLTAMNVWDGVCMCFIY 344


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)
 Frame = -3

Query: 463 ILPGVELLNLWSTTCRCLDY 404
           ++  +  +N+W   C C  Y
Sbjct: 376 VVSNLTAMNVWDGVCMCFIY 395


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 5/20 (25%), Positives = 10/20 (50%)
 Frame = -3

Query: 463 ILPGVELLNLWSTTCRCLDY 404
           ++  +  +N+W   C C  Y
Sbjct: 325 VVSNLTAMNVWDGVCMCFIY 344


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 18  PVYIPQPRPPHPRLRRE 34



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 46  PVYIPQPRPPHPRLRRE 62



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 74  PVYIPQPRPPHPRLRRE 90



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 102 PVYIPQPRPPHPRLRRE 118



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 130 PVYIPQPRPPHPRLRRE 146



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 160 PQEIPETRFCHNRIRRE 110
           P  IP+ R  H R+RRE
Sbjct: 158 PVYIPQPRPPHPRLRRE 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,047
Number of Sequences: 438
Number of extensions: 2431
Number of successful extensions: 28
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)