Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H14
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6L0I0 Cluster: Hypothetical transporter; n=1; Picrophi...    33   4.1  
UniRef50_A3GG34 Cluster: Sporulation protein involved in sister ...    33   5.4  

>UniRef50_Q6L0I0 Cluster: Hypothetical transporter; n=1; Picrophilus
           torridus|Rep: Hypothetical transporter - Picrophilus
           torridus
          Length = 344

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 523 FFCYTYVYYCKAFGFVLLYEKMFFYAYLSIIS 428
           FF Y Y+   +   F++LY   FFYAY+ I++
Sbjct: 94  FFFYAYIGINRDIAFIMLYLYYFFYAYMIILN 125


>UniRef50_A3GG34 Cluster: Sporulation protein involved in sister
           chromatid cohesion; n=2; Pichia stipitis|Rep:
           Sporulation protein involved in sister chromatid
           cohesion - Pichia stipitis (Yeast)
          Length = 618

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 174 QNATKFIRNLYKNVYKSNTD*GHKFIYSSTINDICKYCVRFNGAVT*KCK 323
           Q+ T+   NLY+NV++ NT     F   ST N+   Y ++F+  +  + K
Sbjct: 511 QSRTRTYGNLYENVHRENTTFSQPFGIGSTTNEGQYYTIKFSDLIPSRSK 560


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,521,909
Number of Sequences: 1657284
Number of extensions: 10382909
Number of successful extensions: 21351
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21335
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)