Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H14
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium transp...    29   3.5  
AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium
           transporter homolog protein1 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -2

Query: 347 KYIIRTRVFTFLSNRAIESHAIFTYVVYCTRVDKFVTSV 231
           +Y+      T +S    E     TYV YCT +  F+  V
Sbjct: 118 QYVFSATAATIVSGAVAERCEFITYVTYCTVISTFIYPV 156


>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +3

Query: 267 NDICKYCVRFNGAVT*KCKNSSPDYIFFVIFILNEVI*MKTLRCQNFFAISSC*EIILRY 446
           + I  Y   F+G       +S+P    F+  I+++ + +   R QN   +S+  ++IL  
Sbjct: 591 SQIVDYLQCFDGVAKASQSHSAPVLFKFLYAIIDKCVGLMRSRNQNELVVSNILQLILDV 650

Query: 447 A*K-NIFSYNKTKPNAL 494
             K +I+  N+ + NAL
Sbjct: 651 TTKVSIYIDNEDESNAL 667


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,314
Number of Sequences: 27780
Number of extensions: 275021
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)