Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H13
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949... 28 4.5
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 27 7.9
07_03_0262 + 15944259-15944514,15945524-15945597,15946320-159464... 27 7.9
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 27 7.9
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 27 7.9
01_06_1791 - 39907362-39907453,39907682-39907753,39907941-399080... 27 7.9
01_06_1372 + 36726129-36728240 27 7.9
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 27 7.9
>10_06_0006 -
9496990-9497592,9497695-9497802,9497884-9497997,
9498170-9498219,9498346-9498434,9498542-9498738,
9498877-9499038,9499337-9499455,9499579-9499666,
9499744-9499849,9499968-9500056,9500167-9500319,
9500434-9500526,9500625-9500691,9500811-9500923,
9501544-9501639,9501782-9501961
Length = 808
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +2
Query: 209 PGQCRYVLIHDYVDR---NFTVLLQLQNGQPKALVLEDK-SGTIIELKDNGQ-VTLNGAA 373
P Q Y + ++++ N +L + G P + + G++ + G VTL+ A
Sbjct: 679 PSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASAEVGDTVTLSCGA 738
Query: 374 HGFPVIEKDVFAFKQTNGRIG 436
HG + DV +F GR G
Sbjct: 739 HGRTISSVDVASFGVARGRCG 759
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 282 TDSPRHWFWRTRAEPSLSLKTMDR*H*MELPTAS 383
T PR+ +WR +P+LS K +++ + P+AS
Sbjct: 662 TTMPRNRYWRKPVKPTLSAKKLEQSAQRKPPSAS 695
>07_03_0262 +
15944259-15944514,15945524-15945597,15946320-15946400,
15946621-15946713,15946946-15947014,15947578-15947697,
15948342-15948413,15948624-15948701,15949463-15949654
Length = 344
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 340 RQWTGDTEWSCPRLPCH*EG--RIRVQTD 420
R W T WSC R C G R+R+ T+
Sbjct: 51 RDWWWSTSWSCWRKACRKSGGDRLRILTE 79
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 14 PVWSGDASWSLLKQLISGDYPDLLTLVRTYRPRSINPLDEMPA 142
P+ ++ W LL+ +S D PDLL V+ P + + MPA
Sbjct: 363 PIRWPNSPWRLLQ--VSWDEPDLLQNVKRVSPWLVELVSNMPA 403
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 50 KQLISGDYPDLLTLVRTYRPRSINPLDEMPAKLRAVV 160
++L++GD+ L L+++Y P +I+ L + KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>01_06_1791 -
39907362-39907453,39907682-39907753,39907941-39908045,
39908212-39908302,39908787-39908849,39909448-39909497,
39909632-39909716
Length = 185
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 287 QPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTNGRIGLGSKYGLMAF 466
+P++ L+ G I++ G +T +G+ D F F NG++ G GL+
Sbjct: 47 KPESCTLQAHKGDKIKVHYRGSLT-DGSVFDSSYDRGDPFEFTLGNGQVIKGWDQGLLGM 105
Query: 467 CTSK 478
C +
Sbjct: 106 CVGE 109
>01_06_1372 + 36726129-36728240
Length = 703
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 180 KMCCPLMTTARSLA-GISSSGLIDRGL*VRTKVSKSG*SPDI 58
K C P + T +L G+ +G ID+ + T +++ G PDI
Sbjct: 609 KNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDI 650
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 278 QNGQPKALVLEDKSGTIIELKDNG---QVTLNGAAHGFPVIEKDVFAFK 415
++ Q + LVL+DKS + + KD Q NG V +KD+ A +
Sbjct: 363 EDKQKEILVLQDKSNMMQDKKDQNNLEQTNSNGGEEELQVKDKDLVALE 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,960
Number of Sequences: 37544
Number of extensions: 290763
Number of successful extensions: 812
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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