Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H13
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 30 1.0
Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr... 29 1.8
AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ... 29 1.8
Z81583-7|CAB04668.1| 268|Caenorhabditis elegans Hypothetical pr... 29 2.3
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 29 2.3
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 29 2.3
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 29 2.3
Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 3.1
Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical pr... 28 4.1
AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein... 28 4.1
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 27 7.1
AL117203-12|CAB60423.1| 487|Caenorhabditis elegans Hypothetical... 27 7.1
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 27 7.1
Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical pr... 27 9.4
AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate cyc... 27 9.4
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore
complex protein protein7 protein.
Length = 1217
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 111 DRSTHLTKCLLNFALWSSTDSTFSRSTANT 200
D+ TH+T ++ AL SSTDST S+S T
Sbjct: 850 DKETHVTTTPVSVALPSSTDSTQSKSAIPT 879
>Z81146-2|CAB03526.1| 340|Caenorhabditis elegans Hypothetical
protein K10D11.2 protein.
Length = 340
Score = 29.1 bits (62), Expect = 1.8
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 74 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 193
P +TLV+TY IN PL+ L+ VV +GQ FTF G
Sbjct: 297 PTDMTLVKTYTGLEINKAVPLNFQGDVLQFVVSSGQADFTFKG 339
>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
protein K03H1.5 protein.
Length = 1385
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 101 YRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVL 232
Y R N + A + H+ T+DG T PG+ YVL
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880
>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
protein R09A1.1 protein.
Length = 1121
Score = 29.1 bits (62), Expect = 1.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 209 PGQCRYVLIHDYVDRNFTVLLQL--QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGF 382
P QCR DY + + +++ +GQP E+K +I+ G++ N HG
Sbjct: 672 PRQCRDF---DYNQQGYHAIMRAIEDSGQPVLWADENKHSAVIQ----GELQFNQNQHGI 724
Query: 383 PVIEKDVFAFKQTNG 427
VIE+ + K T G
Sbjct: 725 EVIEQFLQNIKSTIG 739
>Z81583-7|CAB04668.1| 268|Caenorhabditis elegans Hypothetical
protein T02G6.7 protein.
Length = 268
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 119 NPLDEMPAKLRAVVING---QHIFTFDGKHLTFPGQCRYV 229
+PLD P K+ + +IN ++ TFDG+ F CR++
Sbjct: 77 DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 353 PVHCL*AQ*WFRSCPP 306
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 28.7 bits (61), Expect = 2.3
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +2
Query: 77 DLLTLVRTYRPRSINPLDEMPAKLRAVVINGQHI-----FTFDGKHLTFPGQCRYVLIHD 241
+ +TL RP + L+E P VI ++I +T DG +++ +HD
Sbjct: 415 ETITLHCERRPNQLTQLNEKPLFPTEKVIWDENIIPYENYTGDGVLALDKLNLQFLTLHD 474
Query: 242 YVDRNFTVLLQLQNGQPKALVLED 313
Y+ RNF L QL++ LED
Sbjct: 475 YLLRNFN-LFQLESTYEIRQDLED 497
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 28.7 bits (61), Expect = 2.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 353 PVHCL*AQ*WFRSCPP 306
P HCL Q W+++CPP
Sbjct: 134 PPHCLMPQPWYQTCPP 149
>Z81506-1|CAB04128.1| 555|Caenorhabditis elegans Hypothetical
protein F16H6.1 protein.
Length = 555
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +2
Query: 278 QNGQPKALVLEDKSGTIIELKDNGQVTLNGAAHGFPVIEKDVFAFKQTN 424
Q+G PK+ + +D+SG D G+ NG A GFP++E + TN
Sbjct: 98 QSGSPKSCLWDDQSG------DAGK--YNGFAPGFPLLEIGSCVYVPTN 138
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = -3
Query: 291 GCPFCSCRSTVKFLST*SCINT*RHCPGKV---KCLPSNVKMCCPLM 160
GCP C CRS +FL+ N R P K +C P V C P M
Sbjct: 1230 GCPICDCRSPCEFLNC-PAGNVCRMIPVKCTTPECRP--VAKCIPNM 1273
>Z82272-2|CAB05216.1| 342|Caenorhabditis elegans Hypothetical
protein F55G11.5 protein.
Length = 342
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 74 PDLLTLVRTYRPRSIN---PLDEMPAKLRAVVINGQHIFTFDG 193
P + T+V+ Y IN PL+ L+ VV +G+ FTFDG
Sbjct: 298 PTVGTIVKNYTALEINKAVPLNFQGEVLQFVVSSGKADFTFDG 340
>Z79598-3|CAB01865.1| 680|Caenorhabditis elegans Hypothetical
protein C44H4.3 protein.
Length = 680
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 453 PYLEPRPIRPLVCLNANTSFSMT 385
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>AJ242473-1|CAB43345.1| 680|Caenorhabditis elegans SYM-1 protein
protein.
Length = 680
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 453 PYLEPRPIRPLVCLNANTSFSMT 385
P +PRPIRP+ C N T+ + T
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTT 468
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 191 GKHLTFPGQCRYVLIHDYVD 250
G H QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736
>AL117203-12|CAB60423.1| 487|Caenorhabditis elegans Hypothetical
protein Y48C3A.20 protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 89 LVRTYRPRSINPLDEMPAKLRAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL 268
LV RP L +P K+R + + + ++ GK T + ++ + + NF+ L
Sbjct: 83 LVSRLRPDFNGTLASVPYKVRNIDGYLKKLGSYSGKRPTLSSDLQLMITFEQEESNFSDL 142
Query: 269 LQLQNGQP 292
LQN P
Sbjct: 143 QFLQNQFP 150
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 191 GKHLTFPGQCRYVLIHDYVD 250
G H QCRYVL+ DY D
Sbjct: 717 GTHTYRDNQCRYVLVTDYND 736
>Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical
protein T04D3.4 protein.
Length = 688
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 RAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL-LQLQNGQPKALVLEDKSGT 325
+ V++ G +F +GK++ + + + ++RN + +Q +G ++L +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364
Query: 326 IIEL 337
+EL
Sbjct: 365 QVEL 368
>AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 688
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/64 (18%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 149 RAVVINGQHIFTFDGKHLTFPGQCRYVLIHDYVDRNFTVL-LQLQNGQPKALVLEDKSGT 325
+ V++ G +F +GK++ + + + ++RN + +Q +G ++L +
Sbjct: 305 KTVLLKGSMVFIDEGKYILYMCSVNVTTVRELIERNLHLSDMQRHDGTRDVIMLNQSRMS 364
Query: 326 IIEL 337
+EL
Sbjct: 365 QVEL 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,316,505
Number of Sequences: 27780
Number of extensions: 233864
Number of successful extensions: 679
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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