Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H11
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 122 3e-29
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 68 9e-13
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 56 5e-09
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 48 1e-06
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 48 1e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 40 3e-04
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 38 0.001
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 0.001
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 37 0.002
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.003
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 36 0.006
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 35 0.011
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 31 0.17
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 1.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.6
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 2.8
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 6.5
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.5
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 25 8.7
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 122 bits (295), Expect = 3e-29
Identities = 64/125 (51%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Frame = +3
Query: 237 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAE-DQRYKGIVDAFVRIPKEQG 413
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 414 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXXXXXXXXXT 593
++S WRGN ANV+RYFPTQALNFAFKDK+K++F G + + ++F
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGAA 145
Query: 594 SLCFV 608
SL FV
Sbjct: 146 SLLFV 150
Score = 38.3 bits (85), Expect = 9e-04
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +3
Query: 237 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 416
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 417 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 521
+RG +V+ + L F D K V L G
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLVG 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 68.1 bits (159), Expect = 9e-13
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +3
Query: 252 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 431
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 432 GNFANVIRYFPTQALNFAFKDKYKQ 506
GN N +R FP A+ FA + KQ
Sbjct: 78 GNGTNCLRAFPYGAVQFATFNMLKQ 102
Score = 42.7 bits (96), Expect = 4e-05
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +3
Query: 207 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDA 386
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 387 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 482
I K +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 55.6 bits (128), Expect = 5e-09
Identities = 31/103 (30%), Positives = 53/103 (51%)
Frame = +3
Query: 243 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLS 422
K +AGG + V+K+ VAP++RVK+L Q H S + R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 423 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRY 551
++G+ A + R FP + F ++ ++V + + T R+
Sbjct: 78 LYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRF 120
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 47.6 bits (108), Expect = 1e-06
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 2/143 (1%)
Frame = +3
Query: 117 GSFFVVFPFRVCRS-PSLSASIHPKRTT*SNKMSNLA-DPVAFAKDFLAGGISAAVSKTA 290
G+F++ +P + S P + + T S N DP + ++GG+S A++ +
Sbjct: 165 GAFYISYPTCIAMSIPFTAIQVATYDTCMSFLNPNAVYDPTSH---IISGGLSGAIASSL 221
Query: 291 VAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQ 470
P++ VK LLQ + S I E ++ KG +D I G+ SF++G ++ P
Sbjct: 222 TTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIRPRMVVAMPAT 280
Query: 471 ALNFAFKDKYKQVFLGGVDKNTQ 539
A+++A + K++ + V K +Q
Sbjct: 281 AVSWAAYEAGKEILI-RVSKTSQ 302
Score = 39.1 bits (87), Expect = 5e-04
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +3
Query: 252 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 428
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 429 RGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 530
RG + ++ P+ A+ F+ + +K D+
Sbjct: 79 RGISSVIMGAGPSHAIYFSVLEFFKSKINASPDR 112
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/95 (26%), Positives = 49/95 (51%)
Frame = +3
Query: 225 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPK 404
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 405 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 509
G+ SF+ GN NV++ P ++ F + K+V
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRV 216
Score = 42.3 bits (95), Expect = 5e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 258 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGN 437
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTS---AHPATYDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 438 FANVIRYFPTQALNFAFKDKYKQ 506
N+++ P+ A+++ + K+
Sbjct: 399 SPNLLKVAPSVAISYLVYENCKK 421
Score = 38.3 bits (85), Expect = 9e-04
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 249 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVR-IPKEQGLLSF 425
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 426 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 518
+RG ++ FP A + + K+ ++G
Sbjct: 288 YRGVLVGILGMFPYSATDLGTFEGLKRTWIG 318
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +3
Query: 225 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPK 404
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 405 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 512
+G +RG ++ P +AL FA D Y +++
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 34.3 bits (75), Expect = 0.014
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = +3
Query: 240 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLL 419
A L G + V P E +K+ LQ + +Y G VD F +I K++ +L
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQ------DVKNASKYNGTVDCFTKIVKQERIL 158
Query: 420 SFWRGNFANVIRYFPTQALNFAFKDKYK 503
+ + G A + R+ A F K +
Sbjct: 159 ALYNGFEATMWRHVVWNAGYFGVIQKIR 186
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 243 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQR---YKGIVDAFVRIPKEQG 413
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 414 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 530
+ +RG ++ Y P+ ++ F +K K +F GV+K
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNK 103
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 366 YKGIVDAFVRIPKEQGLLSFWRGNFANV 449
Y DAF +I K +GL +F+RG F ++
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 234 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQ 410
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 411 GLLSFWRG 434
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.011
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 228 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKE 407
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 408 QGLLSFWRG 434
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +3
Query: 249 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFW 428
FL G ++ ++ PI+ VK +Q SK+ YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQSLSASKE------YKNSIHCAYKILTQDGLLRFW 260
Query: 429 RGNFANVIRYFPTQALNFAFKDKYKQV 509
G + R + + F +K ++
Sbjct: 261 SGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 249 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQR-YKGIVDAFVRIPKEQGLLSF 425
FL+GG++A + T P E +K Q+Q ++ +R YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 426 WRG 434
RG
Sbjct: 87 QRG 89
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 35.5 bits (78), Expect = 0.006
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +3
Query: 252 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 431
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 432 GNFANVIRYFPTQALNFAFKDKYKQV 509
GN + Y A F K K +
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLKHL 95
Score = 28.3 bits (60), Expect = 0.93
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 252 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWR 431
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQTF--------PSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 432 GNFANVIRYFP 464
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.7 bits (76), Expect = 0.011
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Frame = +3
Query: 195 T*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIAEDQ 362
T +N SN P + F+AGG++ + A AP++ VK LQ KQ A+ +
Sbjct: 35 TKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTAKSK 93
Query: 363 -----RYKGIVDAFV---RIPKEQGLLSFWRGNFANVIRYFPTQALNF 482
Y+ +D + + +G + +RG N+I P +++NF
Sbjct: 94 SPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 261 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNF 440
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 441 ANVIRYFPTQALNF 482
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 30.7 bits (66), Expect = 0.17
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Frame = +3
Query: 243 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAEDQRYKGIVDAFVRIPKEQG 413
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 414 LLSFWRGNFANVIRYFP---TQALNFAFKDKYKQVFLGGVDKNT 536
+ FW G F + + F AL VF G+D+ T
Sbjct: 227 AVKFWNGKFFTLSQSFKLHLADALCLGVSANGDMVFSSGIDRKT 270
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +3
Query: 252 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSF 425
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 426 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 518
W G + R P A + ++ + LG
Sbjct: 200 WSGVSVTLWRDVPFSAFYWWSYERIRLFLLG 230
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 352 PRTNATRVSSTPSSAFPRSRVCSHSGVVTSP 444
P T A V S P+S+FP + SG ++SP
Sbjct: 310 PPTTAPAVVSPPASSFPLMSSAATSGNISSP 340
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/102 (20%), Positives = 39/102 (38%)
Frame = +3
Query: 207 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDA 386
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 387 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 512
F I ++GL + G +I Y + F + +K +
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKY 106
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 59 LPLCSCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKY 178
+PLC D+ +LL + G RG+ I + K F + +
Sbjct: 165 VPLCETDYFRRLDLLCASCGMALRGYYITALNKKFHIEHF 204
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 71 SCDHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPPKEDHI 199
+C H + NR + GFS SF VR+ +E I
Sbjct: 245 TCQHRNNVGTDLANRVYSIEGFSSKSASDSFFVRRLNGEEQKI 287
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 375 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 467
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = +3
Query: 240 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLL 419
A F A +S+A+S P++ +K+ Q + + I F K +GL
Sbjct: 18 ASTFSAALVSSAISNVIGYPLDSIKVRQQTYN----------FPTIRSCFQNAVKNEGLK 67
Query: 420 SFWRGNFANVIRYFPTQALNFAFKDKYKQVF 512
+RG +I +++++F D K F
Sbjct: 68 GLYRGLTLPLISATLSRSVSFTVYDSLKLTF 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,258
Number of Sequences: 5004
Number of extensions: 47641
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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