Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H11
(610 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 229 2e-62
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 229 2e-62
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.1
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 7.1
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 21 9.4
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 229 bits (559), Expect = 2e-62
Identities = 106/133 (79%), Positives = 115/133 (86%)
Frame = +3
Query: 210 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 389
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 390 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 569
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 570 XXXXXXXTSLCFV 608
TSLCFV
Sbjct: 121 SGGAAGATSLCFV 133
Score = 28.3 bits (60), Expect = 0.062
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +3
Query: 237 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 416
F + +GG + A S V P++ + L V K E + + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172
Query: 417 LSFWRGNFANVIRYFPTQALNFAFKD 494
+RG +V +A F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198
Score = 27.1 bits (57), Expect = 0.14
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 297 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 455
P + V+ + +Q S + + YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 229 bits (559), Expect = 2e-62
Identities = 106/133 (79%), Positives = 115/133 (86%)
Frame = +3
Query: 210 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAF 389
MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+E+QRYKG++D F
Sbjct: 1 MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60
Query: 390 VRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFWRYFXXXXX 569
VRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF RYF
Sbjct: 61 VRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLA 120
Query: 570 XXXXXXXTSLCFV 608
TSLCFV
Sbjct: 121 SGGAAGATSLCFV 133
Score = 28.3 bits (60), Expect = 0.062
Identities = 22/86 (25%), Positives = 37/86 (43%)
Frame = +3
Query: 237 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGL 416
F + +GG + A S V P++ + L V K E + + G+ + +I K G+
Sbjct: 115 FVGNLASGGAAGATSLCFVYPLDFARTRLAAD-VGKAGGE-REFTGLGNCLTKIFKADGI 172
Query: 417 LSFWRGNFANVIRYFPTQALNFAFKD 494
+RG +V +A F F D
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYD 198
Score = 27.1 bits (57), Expect = 0.14
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 297 PIERVKLLLQVQHVSKQIAEDQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 455
P + V+ + +Q S + + YK + + I K +G +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 7.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 352 AICLLTCWT 326
A C+L+CWT
Sbjct: 103 ATCVLSCWT 111
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 7.1
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -1
Query: 352 AICLLTCWT 326
A C+L+CWT
Sbjct: 156 ATCVLSCWT 164
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 440 EVTTPE*EQTLLLGNADEGVDDTLVAL--VLGDLF 342
E+T P E+T+ + N E + +T V +L D F
Sbjct: 368 EITVPSNEETIDINNGAELMQETHVCFFSLLRDAF 402
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 21.0 bits (42), Expect = 9.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 77 DHEITPNLLIKNRGFVFRGFSIPCVPKSFLVRKYPP 184
D ++P I+NR + G S P + K+PP
Sbjct: 374 DLRMSPLPSIRNRSGLVSGSSTPGTGREHDPAKFPP 409
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,554
Number of Sequences: 438
Number of extensions: 3540
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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