Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H10
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   2.9  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   6.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   9.0  

>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 365 VFIYLFIISVNIKRIYTYECTIFVTRQSFMTKIDISTFNSHLSI*K 228
           +F+Y   I    +R + +ECTI + R+SF    DI+    HL + K
Sbjct: 5   LFLYFDAIRHANQRRWCHECTIKIFRRSF----DIARHTVHLCVRK 46


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 70  SVYRLSIYRKVNGPHYTSYNKEEQH 144
           ++YR S    +NGPH T+    E H
Sbjct: 199 NMYRASSESNLNGPHATAGENGEDH 223


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +3

Query: 354 INENKRKVTCRRRRVMFFNVYPRLFLFNLVKRCP*ICDKIYSKYR*RITIYVC 512
           + +NK K +   ++++  NV+P+  +  + ++C  I  K + K +  +  Y C
Sbjct: 767 VKDNKLKASKELQKLIEENVFPKNLILFIFRKCV-IGIKSFEKLQSYVFTYYC 818


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 395 TPTPTRDFSLVFIYLFIISV-NIKRIY 318
           TP P + FSL+  Y+ I+ + ++K I+
Sbjct: 41  TPIPKQTFSLIVFYILIMIIQHLKEIH 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,947
Number of Sequences: 5004
Number of extensions: 28079
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)