Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H10
         (519 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    31   2.4  
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    29   7.4  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -1

Query: 519 YTYIHILLFVIDILNRFYHISMGTFLQG*IKIILGRR*KTLHAYAYT*LFS----CFHL- 355
           + YIHI  +    +  F +  M T++    +I +      +HAYAY  ++S    C H+ 
Sbjct: 14  HMYIHIHAYAYICI--FIYTHMHTYVYSYTRICIHMYIH-IHAYAYIYVYSYTRICIHIC 70

Query: 354 -FIYNKRKHKTYIHIRVY 304
            FIY       YIHI  Y
Sbjct: 71  IFIYTHMHTYMYIHIHAY 88


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -1

Query: 396 HAYAY--T*LFSCFHLFIYNKRKHKTYIHIRVYDIRHTSKFYDKNRYFHVQL 247
           HAY +  T   +C H+  +      T+IH R Y  RHT      N+Y +  +
Sbjct: 10  HAYTHMHTDTHTCTHIHSHIHTFTCTHIHRRTYTHRHTHTLMHTNKYIYTHM 61


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 384 YT*LFSCFHLFIYNKRKHKTYIHIRVYDIRHTSKFYDKNRYFHVQL 247
           Y  ++ C H+ +Y+     TY++I VY   H   +   +RY +V +
Sbjct: 209 YIHIYICIHVCVYSYIHMYTYVYIHVYIGIHMCVYSYMHRYTYVYI 254


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,826,994
Number of Sequences: 237096
Number of extensions: 862409
Number of successful extensions: 4916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4910
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)