Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H10
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical...    31   0.65 
U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical p...    27   6.1  
AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm rece...    27   6.1  

>AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical
           protein F45C12.16 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 312 VCVYTFYVYAYYK*INENKRKVTCRRRRVMFFNV 413
           +C Y F+   YYK I+ NKR   C    +  FN+
Sbjct: 163 ICTYYFFSEFYYKIISGNKRDCGCSGSDLFGFNI 196


>U41556-10|AAM51520.1|  415|Caenorhabditis elegans Hypothetical
           protein C25B8.7 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = -2

Query: 506 IYCYSLSIF*IDFITYLWAPFYXXXXXXXXXXXXKHYTPTPTRDFSLVFIYLFIISVNIK 327
           ++CY   I  I F TY W   Y                      F++VF  + I+S  + 
Sbjct: 172 LFCYLSWIISIGFATYYWMYSYMYFVNATVDIQFSPVNKIFYEVFTVVFCVIPIVSSLLV 231

Query: 326 RIYTYECT 303
             Y Y+ T
Sbjct: 232 SCYLYDLT 239


>AF000298-6|AAC48262.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 122 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 249 VERGN-IDFCHKTLTCDEYRTLVCVYTFYVYAYYK*INENKRKVTCRRRRV 398
           V R N IDF      C        V T      YK IN+NKR ++ R + +
Sbjct: 192 VSRANWIDFLGTATNCTVMTICTMVMTISGLKTYKKINDNKRTISKRTKEL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,910,648
Number of Sequences: 27780
Number of extensions: 154616
Number of successful extensions: 275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)