Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H09
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   0.91 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   4.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.4  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 0.91
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 99  THQTLSARIVGSHPLSLS 46
           +H+ LSA +   HPLSLS
Sbjct: 323 SHEELSAMVNRCHPLSLS 340


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 371 LCLPTVT*AYRHNGLSNTHTRYC 303
           +CL  +T   R NGL+   T+ C
Sbjct: 33  ICLFPITINIRKNGLNYNFTKKC 55


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 43  KRERQWMTSHYACT*C 90
           ++E QW +S   CT C
Sbjct: 681 RQEAQWTSSDNPCTTC 696


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,925
Number of Sequences: 336
Number of extensions: 2660
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)