Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H08
(546 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory pro... 23 1.7
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.3
AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory recept... 22 3.0
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 21 7.0
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 21 7.0
AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment h... 21 9.3
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 21 9.3
>DQ855492-1|ABH88179.1| 251|Tribolium castaneum chemosensory
protein 6 protein.
Length = 251
Score = 23.0 bits (47), Expect = 1.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 289 TGRSLQAPILRSMSGVNAPPIAAAPMRTDGVIRSTTSASVRT 164
T S +PIL + G N AA+ + + + TTS + RT
Sbjct: 130 TNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTSTTTRT 171
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 243
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 243
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 243
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 243
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 22.6 bits (46), Expect = 2.3
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 210 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 243
>AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory receptor
candidate 43 protein.
Length = 353
Score = 22.2 bits (45), Expect = 3.0
Identities = 9/43 (20%), Positives = 19/43 (44%)
Frame = -3
Query: 145 NFSLCSLSPPSGRFFTISPRESTIQMXXXXXXXXXXXAFIAIT 17
+F L + G+FF ++PR ++ F+A++
Sbjct: 2 DFQLLQIMFTIGKFFALTPRSIKLEKQTFIQKFYAVAFFLALS 44
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 21.0 bits (42), Expect = 7.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = +2
Query: 230 RRRVHSGHTAQDGRLQRPTRHIRA 301
++ +HS H G++ T H++A
Sbjct: 311 KKNIHSCHIPGCGKVYGKTSHLKA 334
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 21.0 bits (42), Expect = 7.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 373 SRRVPRSRSTGPRTVGCCVPGKGTTPTY 456
S P + + P+ P G+TPTY
Sbjct: 163 SSSYPANEISCPQVQWSATPQAGSTPTY 190
>AY695258-1|AAW21975.1| 232|Tribolium castaneum muscle segment
homeodomain protein protein.
Length = 232
Score = 20.6 bits (41), Expect = 9.3
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = -2
Query: 500 IDDPGADDAERESREYVGVVPLPGTQHPTV 411
+DD D E S V +P HP+V
Sbjct: 44 VDDDDTDGRESLSPSSAHTVLIPQPLHPSV 73
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 20.6 bits (41), Expect = 9.3
Identities = 9/28 (32%), Positives = 10/28 (35%)
Frame = -1
Query: 462 PGICRSCSLARYAAPDRPWSGTPGTGNP 379
PG C R P + G P G P
Sbjct: 47 PGSCDPSVGLRQGIPPHHYGGPPSGGQP 74
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,060
Number of Sequences: 336
Number of extensions: 1876
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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