Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H08
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 159 1e-39
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 149 1e-36
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 149 1e-36
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 116 2e-26
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 105 2e-23
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 87 1e-17
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.79
12_02_1113 - 26165074-26165889,26166077-26166202,26166294-261664... 29 3.2
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 29 3.2
02_04_0501 + 23514393-23514680 28 5.6
11_06_0324 - 22371523-22371567,22372147-22372488,22372577-22372594 27 7.4
02_02_0019 - 6148580-6149122 27 9.8
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 159 bits (387), Expect = 1e-39
Identities = 75/145 (51%), Positives = 101/145 (69%)
Frame = +3
Query: 69 IWMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAFTP 248
+W+VDSRGLIV++R E L K+ FA +H PV+TL E V I P+VLIG + +G FT
Sbjct: 348 VWLVDSRGLIVESRKES-LQHFKQPFAHEHEPVKTLLEAVQSIKPTVLIGTSGVGKTFTQ 406
Query: 249 DILRKMGACNDRPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTKDGRVLR 428
+++ M A N++PVIFALSNPTS +ECTAEEAY+ T A+FASGSPF +G+
Sbjct: 407 EVVEAMAAFNEKPVIFALSNPTSHSECTAEEAYTWTKGSAVFASGSPFDAVE-YEGKTYV 465
Query: 429 TGQGNNSYIFPGLALGIICAGIVDI 503
GQ NN+YIFPG LG++ +G + +
Sbjct: 466 PGQSNNAYIFPGFGLGVVISGAIRV 490
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 149 bits (362), Expect = 1e-36
Identities = 67/145 (46%), Positives = 102/145 (70%)
Frame = +3
Query: 69 IWMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAFTP 248
IW++DS+GLIV +R + L K+++A +H PV+ L + V +I P+ LIG+A +G +FT
Sbjct: 351 IWLLDSKGLIVSSRKDS-LQPFKKRYAHEHEPVKDLLDAVKVIKPTALIGSAGVGQSFTK 409
Query: 249 DILRKMGACNDRPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTKDGRVLR 428
+++ M + N+RP+I ALSNPTS++ECTAE+AYS + RAIF SGSPF + D ++
Sbjct: 410 EVIEAMSSINERPIILALSNPTSQSECTAEQAYSWSKGRAIFGSGSPFDPVKYND-KLFV 468
Query: 429 TGQGNNSYIFPGLALGIICAGIVDI 503
Q NN+YIFPG LG++ +G + +
Sbjct: 469 PAQANNAYIFPGFGLGVVISGAIRV 493
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 149 bits (362), Expect = 1e-36
Identities = 71/145 (48%), Positives = 100/145 (68%)
Frame = +3
Query: 69 IWMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAFTP 248
IW+VDS+GLIV +R E L K+ +A +H PV L + V I P+VLIG + G FT
Sbjct: 339 IWLVDSKGLIVSSRKET-LQHFKKPWAHEHEPVGNLLDAVKTIKPTVLIGTSGKGQTFTQ 397
Query: 249 DILRKMGACNDRPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTKDGRVLR 428
+++ + + N+RPVIFALSNPTS++ECTAE+AY+ + RA+FASGSPF DG++
Sbjct: 398 EVVEAISSFNERPVIFALSNPTSQSECTAEQAYTWSKGRAVFASGSPFDPVE-YDGKIYV 456
Query: 429 TGQGNNSYIFPGLALGIICAGIVDI 503
GQ NN+YIFPG LG++ +G + +
Sbjct: 457 PGQANNAYIFPGFGLGVVMSGAIRV 481
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 116 bits (278), Expect = 2e-26
Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 8/165 (4%)
Frame = +3
Query: 72 WMVDSRGLIVKNRPEGGLNEH---KEKFAKDHPPVR---TLAEVVDLITPSVLIGAAAIG 233
W+VD+ GLI + R + + K H + +L EVV + P V++G +A+G
Sbjct: 390 WIVDAHGLITEERTNIDPDARPFARRKSELGHQGLSEGASLVEVVKKVKPDVILGLSAVG 449
Query: 234 GAFTPDILRKM-GACNDRPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTK 410
G F+ ++L + + + RP IFA+SNPT AECT EEA+S ++ IFASGSPF +
Sbjct: 450 GLFSKEVLEALKDSSSSRPAIFAMSNPTKNAECTPEEAFSILGEKIIFASGSPFSDVDLG 509
Query: 411 DGRVLRTGQGNNSYIFPGLALGIICAGIVDIS-G*LHAPSCRGSS 542
+G++ + QGNN Y+FPG+ LG + +G IS G L A + R +S
Sbjct: 510 NGKIGHSNQGNNMYLFPGIGLGTLLSGARVISDGMLQAAAERLAS 554
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 105 bits (253), Expect = 2e-23
Identities = 60/155 (38%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Frame = +3
Query: 72 WMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVR--------TLAEV------VDLITPSV 209
W++D GLI K+R GL+ ++A+ P +L EV V + P V
Sbjct: 372 WVLDKDGLITKSRK--GLDPAVARYARGFGPEEVQDLHEGASLVEVLYTDHQVRKVKPHV 429
Query: 210 LIGAAAIGGAFTPDILRKMGACND-RPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGS 386
L+G + +GG F ++L+ M + RP IFA+SNPT+KAECT E+ + D A+FASGS
Sbjct: 430 LLGLSGVGGIFNEEVLKAMKESDSPRPAIFAMSNPTTKAECTPEDVFKYVGDNAVFASGS 489
Query: 387 PFPEYRTKDGRVLRTGQGNNSYIFPGLALGIICAG 491
PF +GR Q NN Y+FPG+ LG + +G
Sbjct: 490 PFSNVTLGNGRQGYANQANNMYLFPGIGLGALLSG 524
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 86.6 bits (205), Expect = 1e-17
Identities = 52/145 (35%), Positives = 77/145 (53%)
Frame = +3
Query: 69 IWMVDSRGLIVKNRPEGGLNEHKEKFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAFTP 248
+W++DS+GLIV +R E L K+ +A +H PV TL + V I P+VLIG + +G FT
Sbjct: 417 VWLLDSKGLIVNSRKES-LQAFKKPWAHEHEPVTTLLDAVQSIKPTVLIGTSGVGKTFTK 475
Query: 249 DILRKMGACNDRPVIFALSNPTSKAECTAEEAYSNTDDRAIFASGSPFPEYRTKDGRVLR 428
+++ M S + RA+FASGSPF +G++
Sbjct: 476 EVIEAMA--------------------------SFNEGRAVFASGSPFDPVEY-NGKIHV 508
Query: 429 TGQGNNSYIFPGLALGIICAGIVDI 503
GQ NN+YIFPG LG++ +G V +
Sbjct: 509 PGQSNNAYIFPGFGLGVVISGAVRV 533
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3
Query: 138 EKFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAF 242
EK A D P+ T V+D + PSVL G AI GAF
Sbjct: 224 EKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAF 257
>12_02_1113 -
26165074-26165889,26166077-26166202,26166294-26166457,
26166539-26166576,26166670-26166885,26166984-26167145,
26167212-26167497,26167585-26167761,26167864-26167971,
26168076-26168175,26168283-26168359,26168608-26168803,
26169032-26169363,26169476-26169589,26169651-26169753
Length = 1004
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 503 YIDDPGADDAERESREYVGVVPLPGTQHPT 414
Y+DD ++E E+ G++P G QH T
Sbjct: 62 YVDDDDDGNSEEENSASSGILPCDGMQHDT 91
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 141 KFAKDHPPVRTLAEVVDLITPSVLIGAAAIGGAF 242
K A D P+ T V+D + PSVL G AI GAF
Sbjct: 239 KLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAF 271
>02_04_0501 + 23514393-23514680
Length = 95
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 159 PPVRTLAEVVDLITPSVLIGAAAIGGAFTP 248
PP+R A + L +V++GAA +G TP
Sbjct: 41 PPMRLSALYLMLFGATVIVGAAGVGAPVTP 70
>11_06_0324 - 22371523-22371567,22372147-22372488,22372577-22372594
Length = 134
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 215 RRGGYRRRVHSGHTAQDGRLQRPTRHIRALEPDQQ 319
RR +R R HS D L+RP RH RA P ++
Sbjct: 90 RRRRHRHRRHSSDGGAD--LRRPLRHDRAAAPKER 122
>02_02_0019 - 6148580-6149122
Length = 180
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +3
Query: 303 SNPTSKAECTAEEAYS-NTDDRAIFASGSPFPEY--RTKDGRVLRTGQGNNS 449
S+ + E A++ Y N D+ A A G P PEY R+ R G G S
Sbjct: 117 SSTARRREQYAQDEYEQNFDEGAAAAGGEPEPEYLSRSFSARYAAAGGGRRS 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,720,485
Number of Sequences: 37544
Number of extensions: 267335
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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