Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H08
(546 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 1.5
X72576-1|CAA51168.1| 144|Apis mellifera Apidaecin precursor pro... 23 2.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 3.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 4.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 6.2
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 21 6.2
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 6.2
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.4 bits (48), Expect = 1.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 126 NEHKEKFAKDHPPVRTL 176
NE+ E+F K PPV T+
Sbjct: 548 NENIERFFKSKPPVATM 564
>X72576-1|CAA51168.1| 144|Apis mellifera Apidaecin precursor
protein.
Length = 144
Score = 23.0 bits (47), Expect = 2.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 278 RPTRHIRALEPDQQGGVHRRGGLQQHRRP 364
RPTR R EP+ + G +R + Q R P
Sbjct: 28 RPTRLRREAEPEAEPGNNRPVYIPQPRPP 56
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 230 RTLYYFFNLIVPCVLIASMAVLGFTLPPDSGEKL 263
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 193 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 226
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 261 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 294
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 2.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 168 RTLAEVVDLITPSVLIGA-AAIGGAFTPDILRKM 266
RTL +LI P VLI + A +G PD K+
Sbjct: 261 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 294
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 3.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -3
Query: 310 GFESANMTGRSLQAPILRSMSGVNAPPIAAAPM 212
G + S +RS +G PP A APM
Sbjct: 385 GVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPM 417
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 21.8 bits (44), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 192 LITPSVLIGAAAIGGA 239
L TP+V + AA+ GGA
Sbjct: 585 LFTPAVGVAAASAGGA 600
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 69 IWMVDSRGLIVKNRPEG 119
+W+V + L N PEG
Sbjct: 259 VWIVTEQALDASNAPEG 275
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/26 (26%), Positives = 13/26 (50%)
Frame = +3
Query: 276 NDRPVIFALSNPTSKAECTAEEAYSN 353
ND+P+ + N C+ +Y+N
Sbjct: 155 NDKPIPASCCNSPENNTCSISNSYTN 180
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.4 bits (43), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 449 GVVPLPGTQHPTVLGPVLRERGTRR 375
G +P P T PT + +LR RR
Sbjct: 154 GSLPTPVTPTPTTVQQLLRRAQIRR 178
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,159
Number of Sequences: 438
Number of extensions: 2577
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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