Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H07
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    37   0.002
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    31   0.14 
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    27   1.7  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    27   2.3  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   4.0  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   7.0  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    25   9.3  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.3  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 218 VRILKKIHRPLCFV---CYIAALAWFFMLANKEFNNETYFSENALLPGLVTNEFNGEY 382
           +R+   + R L F+     +  L+W F+L   E  +  + SE+ALLPG V   F   Y
Sbjct: 9   IRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRY 66


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 12/55 (21%), Positives = 31/55 (56%)
 Frame = +2

Query: 335 NALLPGLVTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
           N++L  +++ E+N   D K+  NE++  ++ +  + + I +      ++QLH ++
Sbjct: 44  NSILQEIISTEYNYSVDLKKTLNEIIMPIEGQSMEREAIGICTCFKTLNQLHTKL 98


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 230 KKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSEN 337
           K +H P+CF+C             K F N  YFSE+
Sbjct: 169 KHVHCPVCFLCSKDEDPEEVDAWKKSFENSPYFSES 204


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 269 AALAWFFMLANKEFNNETYFSENALLPGLVTN 364
           A + WF  L    F N+ Y   N  L G+V N
Sbjct: 497 AQMGWFNSLFTPSFANDIYIYGNVTLYGIVDN 528


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 375 GNMMRNSISMNCWKN 419
           GN   NSIS NCW +
Sbjct: 114 GNFANNSISNNCWNS 128


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 187 IRSRVWIRKMGQNLEKDTQA 246
           +R RVW + +G NL+ D Q+
Sbjct: 220 VRGRVWEKAIGNNLKLDYQS 239


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 413 EELQDKYEDTDEIPVPWLVAKMSQL 487
           E + D+ EDTD   +P  VAKMS +
Sbjct: 191 ESVADQIEDTDLKFLPGSVAKMSNI 215


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 233 KIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALL 346
           K + P C+    A L W  + AN+E N ++Y  ++  L
Sbjct: 332 KEYNPYCYFLEYAILHWNTLFANEE-NWDSYIPQDPTL 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,451
Number of Sequences: 5004
Number of extensions: 37731
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)