Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H07
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0278 - 28111655-28112531,28113896-28114029,28114131-281149...    30   1.3  
07_03_1480 + 26857937-26858611                                         28   4.1  
11_06_0673 - 26114861-26115003,26115141-26115290,26115372-261155...    27   7.1  
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805...    27   7.1  

>01_06_0278 -
           28111655-28112531,28113896-28114029,28114131-28114992,
           28115636-28115735,28115848-28115939,28116031-28116122
          Length = 718

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 257 VCYIAALAWFFMLANKEFNNETYFSENALLPGLVTNEFNGE--YDAKQYFNELLEELQDK 430
           VC  A +     L +   N  TY SENAL+PG     F+ E   +A ++   +   + + 
Sbjct: 33  VCCTAGIIALLFLPSLAKN--TYLSENALIPGSANTLFSTEDVQEANRFAKGIEAAIGES 90

Query: 431 YEDTDEIP 454
              T EIP
Sbjct: 91  RGGTTEIP 98


>07_03_1480 + 26857937-26858611
          Length = 224

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 243 LCIFFKILTHFTDPYSGSDNK 181
           LC FF   + FTD Y G+D K
Sbjct: 87  LCAFFCAFSQFTDSYVGADGK 107


>11_06_0673 -
           26114861-26115003,26115141-26115290,26115372-26115561,
           26115646-26115851,26117018-26117459
          Length = 376

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 287 FMLANKEFNNETYFSENALLPGLVTNEFNGEYDAKQYFNELLEELQDK-----YEDTDEI 451
           + +   + N+  +F+    +  +V  EFNG+Y AK+ FN   + + D      Y   + I
Sbjct: 177 YKVVGNQINDVIFFN---CVHDIVGAEFNGKYTAKENFNRYQKAIVDSQRKEAYNALESI 233

Query: 452 PVPWLV 469
           P  +++
Sbjct: 234 PFDYIM 239


>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
            8057595-8058314,8058404-8058603,8058988-8059172,
            8059287-8059354,8059432-8060246,8060502-8060599,
            8060702-8060887,8061358-8061538,8061651-8061812,
            8061894-8061937,8062059-8062115,8062409-8062505,
            8062614-8062786,8062868-8063081,8063270-8063395,
            8064072-8064188,8064459-8064566,8064729-8064898,
            8065049-8065127,8065211-8065285,8065845-8065942,
            8066030-8066137,8066238-8066295,8066527-8066631,
            8067461-8069516,8069804-8070697,8070896-8071852,
            8072022-8072075,8072157-8072222,8072294-8073472,
            8073868-8075598,8075764-8075829,8076763-8077788,
            8077893-8078041
          Length = 4264

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
 Frame = +2

Query: 146  SALINHYVVKMGLLSDPEYGSVKW-VRILKKIHRPLCFVCYIAALAWFFMLANKEFNNET 322
            + L+  Y   M     P+   ++W   I+ + HR     C + A    +  +++     T
Sbjct: 1129 NVLLTTYEYLMNKHDRPKLSKIQWHYIIIDEGHRIKNASCKLNADLKHYRSSHRLLLTGT 1188

Query: 323  YFSEN-----ALLPGLVTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKM 478
                N     ALL  L+ N FN   D  Q+FN+  E   D   +  E  +P  + ++
Sbjct: 1189 PLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDSSTEEVENELPEKIERL 1245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,100,362
Number of Sequences: 37544
Number of extensions: 200325
Number of successful extensions: 448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)