Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H07
(531 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004129-1|AAH04129.1| 621|Homo sapiens glycosylphosphatidylino... 61 3e-09
BC003171-1|AAH03171.1| 621|Homo sapiens glycosylphosphatidylino... 61 3e-09
AB006969-1|BAA24035.1| 621|Homo sapiens hGAA1 protein. 61 3e-09
AB002137-1|BAA82590.1| 621|Homo sapiens glycosylphosphatidylino... 61 3e-09
AB002135-1|BAA82588.1| 621|Homo sapiens glycosylphosphatidylino... 61 3e-09
BC019878-1|AAH19878.1| 314|Homo sapiens DNAH3 protein protein. 31 3.3
AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dy... 31 3.3
>BC004129-1|AAH04129.1| 621|Homo sapiens
glycosylphosphatidylinositol anchor attachment protein 1
homolog (yeast) protein.
Length = 621
Score = 60.9 bits (141), Expect = 3e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = +2
Query: 176 MGLLSDPEYGSVKWVRILKKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALLPGL 355
MGLLSDP R++ +++ PLC + Y+A +AWF L TY SENA+ +
Sbjct: 1 MGLLSDPVRRRAL-ARLVLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTM 59
Query: 356 VTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
V +F G A+ + + + + +PV WL M + LEV
Sbjct: 60 VEEQFAGGDRARAFARDFAAH----RKKSGALPVAWLERTMRSVGLEV 103
>BC003171-1|AAH03171.1| 621|Homo sapiens
glycosylphosphatidylinositol anchor attachment protein 1
homolog (yeast) protein.
Length = 621
Score = 60.9 bits (141), Expect = 3e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = +2
Query: 176 MGLLSDPEYGSVKWVRILKKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALLPGL 355
MGLLSDP R++ +++ PLC + Y+A +AWF L TY SENA+ +
Sbjct: 1 MGLLSDPVRRRAL-ARLVLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTM 59
Query: 356 VTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
V +F G A+ + + + + +PV WL M + LEV
Sbjct: 60 VEEQFAGGDRARAFARDFAAH----RKKSGALPVAWLERTMRSVGLEV 103
>AB006969-1|BAA24035.1| 621|Homo sapiens hGAA1 protein.
Length = 621
Score = 60.9 bits (141), Expect = 3e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = +2
Query: 176 MGLLSDPEYGSVKWVRILKKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALLPGL 355
MGLLSDP R++ +++ PLC + Y+A +AWF L TY SENA+ +
Sbjct: 1 MGLLSDPVRRRAL-ARLVLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTM 59
Query: 356 VTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
V +F G A+ + + + + +PV WL M + LEV
Sbjct: 60 VEEQFAGGDRARAFARDFAAH----RKKSGALPVAWLERTMRSVGLEV 103
>AB002137-1|BAA82590.1| 621|Homo sapiens
glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
protein.
Length = 621
Score = 60.9 bits (141), Expect = 3e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = +2
Query: 176 MGLLSDPEYGSVKWVRILKKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALLPGL 355
MGLLSDP R++ +++ PLC + Y+A +AWF L TY SENA+ +
Sbjct: 1 MGLLSDPVRRRAL-ARLVLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTM 59
Query: 356 VTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
V +F G A+ + + + + +PV WL M + LEV
Sbjct: 60 VEEQFAGGDRARAFARDFAAH----RKKSGALPVAWLERTMRSVGLEV 103
>AB002135-1|BAA82588.1| 621|Homo sapiens
glycosylphosphatidylinositol anchor attachment 1 (GPAA1)
protein.
Length = 621
Score = 60.9 bits (141), Expect = 3e-09
Identities = 35/108 (32%), Positives = 53/108 (49%)
Frame = +2
Query: 176 MGLLSDPEYGSVKWVRILKKIHRPLCFVCYIAALAWFFMLANKEFNNETYFSENALLPGL 355
MGLLSDP R++ +++ PLC + Y+A +AWF L TY SENA+ +
Sbjct: 1 MGLLSDPVRRRAL-ARLVLRLNAPLCVLSYVAGIAWFLALVFPPLTQRTYMSENAMGSTM 59
Query: 356 VTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLHLEV 499
V +F G A+ + + + + +PV WL M + LEV
Sbjct: 60 VEEQFAGGDRARAFARDFAAH----RKKSGALPVAWLERTMRSVGLEV 103
>BC019878-1|AAH19878.1| 314|Homo sapiens DNAH3 protein protein.
Length = 314
Score = 30.7 bits (66), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 341 LLPGLVTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLH 490
L G++++ F G K + L+ L D + PVPW + K+ Q++
Sbjct: 75 LFQGIISDLFPGVVLPKPDYEVFLKVLNDNIKKMKLQPVPWFIGKIIQIY 124
>AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dynein
type 3 protein.
Length = 4116
Score = 30.7 bits (66), Expect = 3.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 341 LLPGLVTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVPWLVAKMSQLH 490
L G++++ F G K + L+ L D + PVPW + K+ Q++
Sbjct: 1648 LFQGIISDLFPGVVLPKPDYEVFLKVLNDNIKKMKLQPVPWFIGKIIQIY 1697
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,085,403
Number of Sequences: 237096
Number of extensions: 1231339
Number of successful extensions: 6100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6100
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -