Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H07
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 140 INSALINHYVVKMGLLSDP 196
           IN    NH+V+KMG+   P
Sbjct: 884 INEQSFNHFVLKMGINHGP 902


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 126 YCTNYYYKFNYKQ*AYSFSKYISLI 52
           Y  NYY   NYK+  Y+ + YI  I
Sbjct: 313 YSNNYYNNNNYKKLYYNIN-YIEQI 336


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/46 (23%), Positives = 18/46 (39%)
 Frame = +2

Query: 323 YFSENALLPGLVTNEFNGEYDAKQYFNELLEELQDKYEDTDEIPVP 460
           YF   +L   L    FN + D K Y  +       K+ +   + +P
Sbjct: 281 YFLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLP 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,620
Number of Sequences: 438
Number of extensions: 2418
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)