Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H06
         (435 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1; ...    34   1.5  
UniRef50_Q4UH95 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_Q03JM9 Cluster: Predicted membrane protein; n=2; Strept...    32   6.0  
UniRef50_Q4XT36 Cluster: Putative uncharacterized protein; n=1; ...    32   6.0  
UniRef50_Q22TN3 Cluster: Cation channel family protein; n=3; Tet...    32   6.0  
UniRef50_Q9C6V7 Cluster: Copper amine oxidase; n=3; Arabidopsis ...    31   8.0  
UniRef50_Q6LFD6 Cluster: Integral membrane protein; n=4; Plasmod...    31   8.0  

>UniRef50_Q05FF8 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 337

 Score = 33.9 bits (74), Expect = 1.5
 Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
 Frame = -3

Query: 385 IIYLSNI-FHADINKYYSFKFIALITKILLFFNNGTFKFYFTSYIK--IKEVYLV*VYLN 215
           IIYL N  F  +IN      FI  + KIL FFN   F  YF +  K  +K    V  + N
Sbjct: 42  IIYLFNQNFITEINSL----FIIDLKKILTFFNFNNFVNYFINKNKLILKNKNQVITFYN 97

Query: 214 N*K--CIKTHYK--LIFLLRYLLEKLRMY 140
           N K   +K +YK    F+ + +L KL +Y
Sbjct: 98  NNKYFFLKLNYKNFYFFIKKLILNKLLIY 126


>UniRef50_Q4UH95 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 819

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -3

Query: 388 IIIYLSNIFHADINKYYSFKFIALITKILLFFNNGTFKFYFTSY 257
           IIIY SNIF+  I K    +F   I  ILLF  NG     FT++
Sbjct: 80  IIIYESNIFNEFIKKISCKRFFNNIISILLFLFNGNI-LQFTNH 122


>UniRef50_Q03JM9 Cluster: Predicted membrane protein; n=2;
           Streptococcus thermophilus|Rep: Predicted membrane
           protein - Streptococcus thermophilus (strain ATCC
           BAA-491 / LMD-9)
          Length = 492

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -3

Query: 433 IAL*QSLIIFPVSA*IIIYLSNIFHADINKYYSFKFIALITKILLFFNNGTFKFYFTSYI 254
           IA   S ++F  S    + + ++F    NKYY  K + +++ I LFF N    F +   I
Sbjct: 254 IAFQCSTLLFSFSKFPFVLIGSLFSVLPNKYYENKSVRILSSI-LFFLNLLVSFIYAGII 312

Query: 253 KI 248
           K+
Sbjct: 313 KL 314


>UniRef50_Q4XT36 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 46

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 343 YYSFKFIALITKILLFFNNGTFKFYFTSYIKIKEVYL 233
           YY + +I   T ++LFFNN   K+ F     +  +YL
Sbjct: 5   YYMYSYILFSTHLILFFNNHLLKYGFLLLSYLNIIYL 41


>UniRef50_Q22TN3 Cluster: Cation channel family protein; n=3;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 3661

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 388 IIIYLSNIFHAD-INKYYSFKFIALITKILLFFNNGTF 278
           +I +  N FH+D + K+YSF FI  +  I++  N   F
Sbjct: 364 LIFFDQNDFHSDFVLKFYSFSFIMFLADIIINLNTALF 401


>UniRef50_Q9C6V7 Cluster: Copper amine oxidase; n=3; Arabidopsis
           thaliana|Rep: Copper amine oxidase - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 741

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -3

Query: 406 FPVSA*IIIYLSNIFHADINKYYSFKFIALITKILLFFNNGTFKFYFTSYIKIKE 242
           F V A ++I L++IF  D+NKY    +   +++I + + + +  +YF ++    E
Sbjct: 351 FDVRAGLVISLASIFDMDVNKYRQVLYKGHLSEIFVPYMDPSEDWYFRTFFDCGE 405


>UniRef50_Q6LFD6 Cluster: Integral membrane protein; n=4;
           Plasmodium|Rep: Integral membrane protein - Plasmodium
           falciparum (isolate 3D7)
          Length = 1347

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
 Frame = -3

Query: 388 IIIYLSNIF-HADINKYY-SFKFIALITKILL---FFNNGTFKFYFTS--YIKIKEVYLV 230
           III+ S IF H  +N YY S  FI L+T  +L   + NN  F F FT+  +  I  +Y  
Sbjct: 524 IIIFNSIIFLHGFVNIYYNSLFFIHLLTLCILSMFYLNNKRFIFKFTTQYFYFILFIYFA 583

Query: 229 *VYLNN 212
             +L N
Sbjct: 584 YFFLQN 589


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 327,639,951
Number of Sequences: 1657284
Number of extensions: 5576235
Number of successful extensions: 11777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11765
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)