Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H06
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    29   0.41 
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   2.9  
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ...    25   3.8  

>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -3

Query: 403 PVSA*IIIYLSNIFHAD-INKYYSF---KFIALITKILLFFNNGTFKFYFTSYIKIKE 242
           PV   ++I+ +  FH   + K+ S    +F+ +I K+  F+ NGT K   T  + +KE
Sbjct: 288 PVPVSLLIFKNLKFHGFWVTKWKSEHPEEFLKIIHKVEDFYRNGTLKTVNTELVSLKE 345


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 2   HEDFNRII*FLFNILERMNMFNFYLFTVLF 91
           HE+ N+   ++F + +R++   FY F  LF
Sbjct: 210 HENNNKKNSYVFRLFDRVSSSTFYFFNSLF 239


>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -3

Query: 370 NIFHADINKYYSF---KFIALITKILLFFNNGTFKFY 269
           N+ H D+NK+Y +    +I   T + L    G   FY
Sbjct: 32  NVLHEDLNKFYDYGNTSWILACTPLCLIMVPGVAFFY 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,499,129
Number of Sequences: 5004
Number of extensions: 26759
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)