Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H06
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    29   1.5  
AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical...    28   3.4  
Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical pr...    27   5.9  
AF077537-13|AAC26282.1|  190|Caenorhabditis elegans Hypothetical...    27   5.9  
U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine rec...    27   7.8  

>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 415 LIIFPVSA*IIIYLSNIFHADINKYYS-FKFIALITKILLFFNNGT-FKFYFTSYIKIKE 242
           +IIF V+     + S +    IN Y + F+F ++ T +L +FN  T F  Y T   K ++
Sbjct: 271 IIIFVVTEFPQGFFSVVGGLSINDYINYFQFFSVFTNLLAYFNTTTSFIIYSTLSSKFRK 330

Query: 241 VYL 233
           +++
Sbjct: 331 LFV 333


>AF077537-12|AAC26281.1|  346|Caenorhabditis elegans Hypothetical
           protein F16G10.14 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 425 LTIFDYFSCLCVNNNISIKYFPCG 354
           +TI DY+  LC NN ++   +P G
Sbjct: 171 ITINDYYGLLCENNKLTASKYPRG 194


>Z81552-4|CAB04488.2|  765|Caenorhabditis elegans Hypothetical
           protein F56G4.6 protein.
          Length = 765

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 388 IIIYLSNIFHADINKYYSFKFIALITKILLFFNNGTFKF 272
           +I+Y    FH    ++Y +  + +ITKI+ F +    KF
Sbjct: 531 MILYFFTRFHIGSMEFYPYNHLLIITKIINFCHWSIRKF 569


>Z47745-1|CAA87663.1|  358|Caenorhabditis elegans Hypothetical
           protein T19H5.2 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 230 YKIYLF-DLDITSEVKFESAIIKKK*YFRNQSNKFKTI 340
           YKI+ F  L+    ++FESAI K+K  F N + K K I
Sbjct: 96  YKIFAFAQLNTNGSLQFESAISKQK--FLNLNRKSKHI 131


>AF077537-13|AAC26282.1|  190|Caenorhabditis elegans Hypothetical
           protein F16G10.1 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 422 TIFDYFSCLCVNNNISIKYFPCG 354
           T+ DYF   C NN +    +P G
Sbjct: 142 TVIDYFGLFCENNKLMASIYPRG 164


>U53154-12|AAC25847.2|  380|Caenorhabditis elegans Serpentine
           receptor, class w protein127 protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 197 FDAFLVVQINLYKIY-LFDLDITSEVKFESAIIKKK*YFRNQSNKF 331
           F   +VV   L+ IY LF   I  E KF+      K YFR+ +  F
Sbjct: 166 FILIVVVFSGLFNIYQLFSYKIAEEEKFDVCFDYVKAYFRDYTQLF 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,872,389
Number of Sequences: 27780
Number of extensions: 139446
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)