Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H06
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   0.64 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 346 KYYSFKFIALITKILLFFNNGTFK 275
           K Y F FI +IT I L+F     K
Sbjct: 3   KNYHFFFILVITLIFLYFGEADIK 26


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 303 YFFLIMALSNFTSLVISRSKRYILYKFI*TT 211
           +  L+  +   TSLV+    +Y+L+ FI  T
Sbjct: 278 FLLLVSKILPPTSLVLPLIAKYLLFTFIMNT 308


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 398 LCVNNNISIKYFP 360
           L +NN  ++K+FP
Sbjct: 876 LMINNKYALKFFP 888


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,527
Number of Sequences: 438
Number of extensions: 1784
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)