Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H05
         (486 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   157   4e-39
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    88   4e-18
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   1.8  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  157 bits (381), Expect = 4e-39
 Identities = 75/148 (50%), Positives = 95/148 (64%)
 Frame = +1

Query: 25  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 204
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 205 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 384
           +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 385 PVIVKAKFFSKTAEQKIKAVGGVCVLSA 468
           P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +1

Query: 196 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXX 375
           MR +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 376 PKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 468
           P+ P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -3

Query: 289 LVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCD 143
           L  P   P S VC+      +PC+++  N+ Y    +    T     C+
Sbjct: 130 LSAPCTEPRSYVCETPSTHEDPCYYNYNNYCYTFSHNQSSFTTAQAICE 178


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 160 DKYHPGYFGKLGMRNYHMRRN 222
           D YH  YFGK G   YH+ RN
Sbjct: 405 DNYHNRYFGKAG---YHLTRN 422


>AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical
           protein Y67A10A.11 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 211 CGNFSY-QVCQSTQGGTCPC 155
           C   +Y + C STQ G CPC
Sbjct: 45  CSQINYSRTCLSTQMGNCPC 64


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 223  CFFSCGNFSYQVCQSTQGGTCP 158
            C FS  N  Y  C + QG  CP
Sbjct: 946  CRFSQSNHKYYCCGNIQGSMCP 967


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,388
Number of Sequences: 27780
Number of extensions: 187893
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)