Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H04
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    27   1.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   1.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.3  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.3  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.3  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    24   9.3  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   9.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   9.3  

>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 96  ALIHTFFYIQRYCINIPVSLLLDGYFY 176
           AL+  FFYI  Y  NIP   +  G  Y
Sbjct: 212 ALLQPFFYISCYGCNIPAGFIAYGVQY 238


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 VDPHLIVMFIHLLPSFLCQNQLSILFSIVFNTSSTKT 336
           +DP L  +FI     F CQ  +S+L    + +SST T
Sbjct: 610 LDPCLAPVFIIPCGHFTCQECMSMLVGQKYGSSSTST 646


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 162 DG-YFYLFLSLEKSIRSKCVRLGRPSPYSYVHPSSTILPMPKPTKHFILYRFQYILYQNA 338
           DG YF+   S ++ +  +   L +P  Y+       +     PT    L  FQ I+Y N+
Sbjct: 669 DGTYFFRTTSRKQILLLEIGILIKPERYNLFKYRVYLPQFLPPTDSRTLVEFQTIVYTNS 728

Query: 339 T--FSYSFNFS 365
           T  F  SF FS
Sbjct: 729 TLLFDGSFYFS 739


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
 Frame = +3

Query: 120  IQRYCINIPVSLLLDGYFYLFLSL-------EKSIRSKCVRLGRPSPYSYVH 254
            +Q Y  N+P    +  ++ L   L       ++S+ S C  +GR  PY  +H
Sbjct: 2288 LQHYLQNLPCKKFIPVFYQLAARLMNENSKFQQSLTSICYNVGRNHPYHSLH 2339


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 166 VIFTFSFL*KSLSGRNVFA*-VDPHLIVMFIHLLPSFLCQNQLS---ILFSIVFNTSSTK 333
           ++  FS+L + L+ R++       +++ M IH+   +  +  +    I++++VF  SS  
Sbjct: 333 LLLIFSYLTRYLTDRDIILLGCCLNIVCMVIHITIHYTGKEFVQPYFIIYTLVFFGSSIA 392

Query: 334 TQPSLILLT 360
             PS+ LLT
Sbjct: 393 NSPSVSLLT 401


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 135 INIPVSLLLDGYFYLFLSLEKSIRSKCVRLGRPSPY 242
           I + V+  L+ YF+L L+L  SIR     LG   PY
Sbjct: 510 ITVLVAKFLESYFFLTLNLADSIRF----LGAMRPY 541


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 225 GRPSPYSYVHPSSTILPMPK 284
           G P PYS +HP   +L +PK
Sbjct: 198 GEP-PYSGIHPMKVLLLIPK 216


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 214 VFA*VDPHLIVMFIHLLPSFLCQNQLSILFSIVFNTSSTKTQPSLILLTF 363
           VFA   P+L V+ +    ++LCQ           +T      P L+ ++F
Sbjct: 376 VFAETHPYLAVLMVDAFGNYLCQKLFEHASEAQRSTFIQIIAPKLVPISF 425


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 216 VRLGRPSPYSYVHPSSTILPMPKPTKHFILYRFQYI 323
           +RL     Y Y+ P+  I+P  K     ILY  ++I
Sbjct: 457 IRLRDMGDYGYLLPAKQIVPTAKEFFAMILYYGEFI 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,404
Number of Sequences: 5004
Number of extensions: 34420
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)