Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H04
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 1.3
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 28 3.0
12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189 28 3.9
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 28 3.9
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 27 6.9
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 27 9.1
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 27 9.1
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540... 27 9.1
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 27 9.1
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 200 RLF*RKEKVKITVKQKRNRYVYTISLYVEECMYESDEF 87
+L+ +K K VK K +R +TI Y E +Y+SD+F
Sbjct: 1065 KLYQTFQKHKRFVKPKLSRTDFTICHYAGEVLYQSDQF 1102
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 201 IRSKCVRLGRPSPYSYVHPSSTILPMP 281
I SKCV+L P+ + HP T+LP P
Sbjct: 597 IHSKCVKLCLPT--ACAHPEGTLLPSP 621
>12_01_1101 - 11602534-11603460,11615583-11615680,11615712-11616189
Length = 500
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 141 IPVSLLLDGYFYLFLSLEKSIRSKCVRLGRPSPYSYVHPSSTILPMPKPTK 293
IP +L + YF L KSI +G+ P + P +I P P+P +
Sbjct: 351 IPAALRMSNYFSTLLLPRKSIFDSSPSVGQHEPEWVLQPFESISP-PQPKR 400
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 282 KPTKHFILYRFQYILYQNATFSYSFNFSLVCPSTLAKLLNSISSQSYLLS 431
KP H IL Q + N F Y +N L +LNS+S YL++
Sbjct: 691 KPKDHIILDEVQECILDN--FWYQYNNKREEKGYLLSILNSLSEYFYLIN 738
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 228 RPSPYSYVHPSSTILPMPKPTKH 296
+P P Y H S+ + P P P +H
Sbjct: 60 QPQPQPYAHHSAPLQPYPPPPQH 82
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 395 KFS*S*WTN*GKVKRIREGCVLVEDVLKTIENKMLS--WFWHRKDGRRWM 252
K+ S W N +V R +EG V E+V + I + S +RK+ RWM
Sbjct: 412 KYIESAWGNGVRVHRDKEGMVRKEEVERCIREVLESERKAEYRKNANRWM 461
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 231 PSPYSYVHPSSTILPMPKPTKHF 299
P P+ Y HPS+T P P P H+
Sbjct: 187 PVPW-YYHPSTTPPPPPPPAAHY 208
>03_02_0069 +
5401789-5401965,5403514-5403568,5403674-5405649,
5405710-5405868,5406081-5406252,5406617-5406915,
5407147-5407392
Length = 1027
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 185 KEKVKITVKQKRNRYVYTISLY 120
KEK KITV+ RN Y +S+Y
Sbjct: 233 KEKKKITVQVSRNGYRQKLSIY 254
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +3
Query: 231 PSPYSYVH---PSSTILPMPKPT-KHFILYRFQY 320
P PY Y++ P ST + P+P KH RFQY
Sbjct: 302 PDPYDYMYSNIPQSTNVLKPEPDCKHCGAKRFQY 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,158,843
Number of Sequences: 37544
Number of extensions: 187679
Number of successful extensions: 460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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