Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H04
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-14|CAA21623.1|  117|Caenorhabditis elegans Hypothetical...    29   2.0  
AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical...    28   2.7  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z71177-8|CAA94866.2|  525|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    27   6.2  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    27   6.2  
AF078790-1|AAC26934.1|  398|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF038605-1|AAK68680.1|  398|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine re...    27   6.2  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    27   8.2  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    27   8.2  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    27   8.2  

>AL032637-14|CAA21623.1|  117|Caenorhabditis elegans Hypothetical
           protein Y43F8C.15 protein.
          Length = 117

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
 Frame = +3

Query: 132 CINIPVSLLLDGYFYLFLSLEKSIRSKCVRLGRPSPYSYV-----HPSSTILPMPKPTKH 296
           C  +P S +  GYFY    +  +  ++CV  G P    Y          T    PKP +H
Sbjct: 49  CARVPGSSINVGYFYEGQQVRPACSNRCVSGGGPPALLYTFKPDPRKDETTTVEPKPIRH 108


>AF039053-14|AAW88407.1|  314|Caenorhabditis elegans Hypothetical
           protein C45H4.18 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
 Frame = +3

Query: 18  PNLIIKAILIT*F---FSDYLA---FCYFKFIALIHTFFYIQRYCINIPVSLLLDGYFYL 179
           P L++K ++   +   +S Y+A   FC  + +AL+H+  + Q+     P+  ++      
Sbjct: 105 PQLVLKIVIYANYMIIYSKYVAMILFCGLR-VALMHSINFQQKTIRWFPMLTMVLIPCAF 163

Query: 180 FLSLEKSIR-SKCVRLGRPSPYSYV 251
            L+L + +  + C +LGRP P+  V
Sbjct: 164 CLALPRLLAPTTCAQLGRPFPFGSV 188


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 155 KRNRYVYTISLYVEECMYESDE 90
           K+   + T+SL VE+CM ESDE
Sbjct: 457 KKYPKMLTLSLLVEKCMQESDE 478


>Z71177-8|CAA94866.2|  525|Caenorhabditis elegans Hypothetical
           protein AC3.2 protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 63  DYLAFCYFKFIALIHTFFYIQRY 131
           D +AF  F F+A++H F Y  ++
Sbjct: 485 DVIAFVLFVFVAVLHVFIYAFKF 507


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 14/138 (10%)
 Frame = +3

Query: 30  IKAILIT*FFSDYL---AFCYFKFIALIHTFFYIQRYCINIPVSLLLDGYFYLFLSLEKS 200
           +K +LI  F  + L   A C+  F   +  FF   +  + I  +L   G    FL L  S
Sbjct: 56  LKCLLIVYFICNLLFSMALCFAFFYQFLIPFFVTSKCQLLINTTLFKWGQICSFLLLTSS 115

Query: 201 IR-------SKCVRLGRPSPYSYVHPSSTILPMPKPTKHFIL----YRFQYILYQNATFS 347
           +         + V LG    Y     S T L    P   FI+    +   + +Y+N  F+
Sbjct: 116 MLLPIGFSIERFVALGNAQKYE---SSRTFLG---PVIIFIIIAVDFSIIFSVYKNEPFT 169

Query: 348 YSFNFSLVCPSTLAKLLN 401
             F   ++ PST A  +N
Sbjct: 170 EGFYSFILVPSTTASQIN 187


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 134 TISLYVEECMYESDE 90
           T+SL VE+CM ESDE
Sbjct: 464 TLSLLVEKCMQESDE 478


>AF078790-1|AAC26934.1|  398|Caenorhabditis elegans Hypothetical
           protein F36H12.10 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 216 VRLGRPSPYSYVHPSSTILPMPKPTKHFI 302
           V+L +PSP +Y+H +    PM  P K FI
Sbjct: 148 VKLDQPSPCNYIHANYVGCPM-IPEKRFI 175


>AF038605-1|AAK68680.1|  398|Caenorhabditis elegans Hypothetical
           protein C02B10.6 protein.
          Length = 398

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 216 VRLGRPSPYSYVHPSSTILPMPKPTKHFI 302
           V+L +PSP +Y+H +    PM  P K FI
Sbjct: 148 VKLDQPSPCNYIHANYVGCPM-IPEKRFI 175


>AF016451-2|AAB65997.2|  290|Caenorhabditis elegans Serpentine
           receptor, class x protein39 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 156 LLDGYFYLFLSLEKSIRSKCVRLGRPSPYSYVHPSSTIL 272
           + DG+F L  + E  IR  C R G+P  ++ V   S  L
Sbjct: 253 MFDGFFTLIFNPE--IRRSCSRSGQPLAFNVVRSKSAAL 289


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 228 RPSPYSYVHPSSTILPMPKPTKHFILYR---FQYILYQNATFSYSFNFSLVC 374
           RP   S V  +ST+ P+PK +  FIL     F+         SY  N  L C
Sbjct: 756 RPRRMSEVPAASTVKPIPKASSLFILSHTNSFRVFCNMVVNHSYFTNAVLFC 807


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 228 RPSPYSYVHPSSTILPMPKPTKHFILYR---FQYILYQNATFSYSFNFSLVC 374
           RP   S V  +ST+ P+PK +  FIL     F+         SY  N  L C
Sbjct: 756 RPRRMSEVPAASTVKPIPKASSLFILSHTNSFRVFCNMVVNHSYFTNAVLFC 807


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +3

Query: 228 RPSPYSYVHPSSTILPMPKPTKHFILYR---FQYILYQNATFSYSFNFSLVC 374
           RP   S V  +ST+ P+PK +  FIL     F+         SY  N  L C
Sbjct: 756 RPRRMSEVPAASTVKPIPKASSLFILSHTNSFRVFCNMVVNHSYFTNAVLFC 807


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,237
Number of Sequences: 27780
Number of extensions: 186879
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)