Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H04
         (447 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.87 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.1  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 0.87
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 359 VKRIREGCVLVEDVLKTIEN 300
           V R+REG   +  +LKTIEN
Sbjct: 91  VLRLREGIGSLARILKTIEN 110


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 207 SKCVRLGRPSPYSYVHPSSTILPMPKPTKHFILYRFQYILYQN 335
           S   R+ +P  Y Y    S +  +  P K   LY+   +LY +
Sbjct: 80  SMLARIWKPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSS 122


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 186 SLEKSIRSKCVRLGRPSPYSYVHPSSTI 269
           +LE +I  +      P+P   +HP   I
Sbjct: 366 TLENTINGRADEEAAPAPQHLIHPGKDI 393


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 186 SLEKSIRSKCVRLGRPSPYSYVHPSSTI 269
           +LE +I  +      P+P   +HP   I
Sbjct: 366 TLENTINGRADEEAAPAPQHLIHPGKDI 393


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 186 SLEKSIRSKCVRLGRPSPYSYVHPSSTI 269
           +LE +I  +      P+P   +HP   I
Sbjct: 304 TLENTINGRADEEAAPAPQHLIHPGKDI 331


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 159 LDGYFYLFLSLEK---SIRSKCVRLGRPSPYSYVHPSSTILP 275
           L  YFYLF+ +++   ++R     + R S  S    +STI+P
Sbjct: 535 LQKYFYLFMEMDRFAVTLRPGSNSIERQSSES-PFTTSTIMP 575


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 159 LDGYFYLFLSLEK---SIRSKCVRLGRPSPYSYVHPSSTILP 275
           L  YFYLF+ +++   ++R     + R S  S    +STI+P
Sbjct: 535 LQKYFYLFMEMDRFAVTLRPGSNSIERQSSES-PFTTSTIMP 575


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 281 WHRKDGRRWMNITIR*GST*ANTFR 207
           W RK  R   N ++R G   A+TFR
Sbjct: 26  WFRKGLRLHDNPSLREGLAGASTFR 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,255
Number of Sequences: 438
Number of extensions: 2213
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)