Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H03
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    31   0.099
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   2.8  
SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofacto...    25   3.7  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   6.5  

>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.7 bits (66), Expect = 0.099
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 254 RPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPA 105
           +P+ R+   +  QN S     L+   C   + +K GIE    W+ QSP A
Sbjct: 455 QPVTRDFL-LAAQNASGIYLNLNEQYCLVMKDLKDGIEMKPKWLTQSPAA 503


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 269 GRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIE 141
           GR  +  +   L   L++NN +  C L     PSR G  S I+
Sbjct: 319 GRQGSPKVLENLKNTLRKNNKDFVCVLMSEIFPSRLGQFSDID 361


>SPAC13D6.05 |alp11|SPAC4G9.01|tubulin specific chaperone cofactor
           B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 275 ASGRARTRPIYRELAQVLQQNNSNRCCRLHRSQCPSRR-GMKSGIEYHQLWV 123
           AS  +R   + REL   LQ+N ++RCC         R  G+   I    LWV
Sbjct: 134 ASKASRQESLKRELVD-LQKNLNSRCCAAGERYGTIRYIGLVPEINNDNLWV 184


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 227 PELVPDILAVFALYLKPTFQSINDL 301
           P +    L +  +++KPTFQS+ D+
Sbjct: 505 PSVFIAYLLISPIFVKPTFQSLKDV 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,551,407
Number of Sequences: 5004
Number of extensions: 26246
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)