Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H02
(582 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein. 34 0.32
U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter pro... 34 0.42
AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial... 34 0.42
U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid tra... 33 0.73
AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1... 33 0.73
AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1... 33 0.73
AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid t... 33 0.73
BC033040-1|AAH33040.1| 524|Homo sapiens solute carrier family 1... 32 1.7
AK124536-1|BAC85877.1| 170|Homo sapiens PTPRF), interacting pro... 29 9.1
>U06469-1|AAA53215.1| 524|Homo sapiens HEAAC1 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.32
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL+ +L YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVLYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U08989-1|AAA68628.1| 524|Homo sapiens glutamate transporter
protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.42
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AF074911-1|AAC27511.3| 524|Homo sapiens neuronal and epithelial
glutamate transporter protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.42
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL++++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRVVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>U03506-1|AAA50430.1| 525|Homo sapiens excitatory amino acid
transporter3 protein.
Length = 525
Score = 33.1 bits (72), Expect = 0.73
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 85 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 144
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 145 DLIRNMFPENLVQACFQQYKTK 166
>AL162587-1|CAH71965.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highg) 1 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.73
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AL136231-6|CAI41264.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial highde 1 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.73
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AB008536-1|BAB83767.1| 524|Homo sapiens excitatory amino acid
transporter-3 protein.
Length = 524
Score = 33.1 bits (72), Expect = 0.73
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + GL+ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGLRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>BC033040-1|AAH33040.1| 524|Homo sapiens solute carrier family 1
(neuronal/epithelial high affinity glutamate transporte
protein.
Length = 524
Score = 31.9 bits (69), Expect = 1.7
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 245 TN*SAQSGLKMLLEYFVHGIIEYDLGSILLVFRTPXXXXXXXXXXXXXXXXEVK----FL 412
+N S + G++ ++ YF +I LG +L+V P EV L
Sbjct: 84 SNVSGKIGVRAVVYYFCTTLIAVILGIVLVVSIKPGVTQKVGEIARTGSTPEVSTVDAML 143
Query: 413 DRRKTNISESICQRCFHQSRTK 478
D + E++ Q CF Q +TK
Sbjct: 144 DLIRNMFPENLVQACFQQYKTK 165
>AK124536-1|BAC85877.1| 170|Homo sapiens PTPRF), interacting
protein (liprin), alpha 2 protein.
Length = 170
Score = 29.5 bits (63), Expect = 9.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 142 SADVSVSPLMRCTGSAAHKCNYELFNRNNF 53
S +++ P ++C+G+ CN+EL +NF
Sbjct: 9 SQGLALLPRLKCSGAIIAHCNFELLGSSNF 38
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,850,623
Number of Sequences: 237096
Number of extensions: 1431084
Number of successful extensions: 6967
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6960
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6042162242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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