Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_H02
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    29   1.8  
Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily ass...    28   4.2  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   9.7  

>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 256 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPLMRCTGSAAHKCNY 77
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+   + S+A   N+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPVH--SSSSAFPGNH 100

Query: 76  ELFNRNNFS 50
                NNFS
Sbjct: 101 ----LNNFS 105


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
           protein F10B5.7 protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = -3

Query: 256 TLICSK*NCRPTSTLTEEHRDRILILNRRLTAGSPTICSADVSVSPLMRCTGSAAHKCNY 77
           TL   K  C P +TLT  H +++L+   R+   S +    DV   P+   + S+A   N+
Sbjct: 43  TLPNRKTECTPVNTLTIGHSNKMLLTTFRMDRNSKSKSEVDVQEQPVH--SSSSAFPGNH 100

Query: 76  ELFNRNNFS 50
                NNFS
Sbjct: 101 ----LNNFS 105


>Z73906-6|CAA98113.1|  824|Caenorhabditis elegans Hypothetical
           protein D2030.6 protein.
          Length = 824

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 99  LPVHRISGDTDTSAEHIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFE 245
           +P+     D      H+  EP V  + N + + R ++V+ E+G  F F+
Sbjct: 57  IPIEMTQSDYSIYQYHVEFEPTVDSKANREKMLRDNNVTDEIGHHFVFD 105


>U50068-5|AAB37734.1|  722|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 292 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 114 ISGDTDTSAEHIVGEPAVKRRFNIKILSRCSSVSVEVGRQFYFE 245
           I  D      H+  EP V  +   + + R  SV+VE+G+ F F+
Sbjct: 2   IQNDYSIYQYHVEFEPTVDSKATRENMLRQPSVTVEIGKHFVFD 45


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 58  CCG*KARSCICAPRCRC 108
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 LDRRKTNISESICQRCFHQSRTKVRGS 490
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,108,588
Number of Sequences: 27780
Number of extensions: 241092
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)