Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_H01
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582 206 9e-54
07_01_0525 + 3904388-3904390,3904485-3904645,3905347-3905394,390... 195 2e-50
03_06_0283 - 32832572-32832677,32833343-32833531,32833582-328337... 194 5e-50
07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978 79 3e-15
08_01_0035 - 262750-262962,263046-263277,263420-263627,263762-26... 32 0.33
04_04_1697 - 35454337-35454576,35454657-35454888,35455045-354552... 31 0.44
03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372 31 0.58
03_01_0404 + 3138624-3140096 31 0.58
01_01_0735 + 5730783-5733320 28 4.1
02_05_1211 + 34956601-34956850,34956950-34957102,34957562-349576... 27 7.1
09_06_0179 + 21380018-21380346,21380468-21380595,21380710-213808... 27 9.4
>07_01_0527 + 3915670-3915821,3916866-3917054,3917477-3917582
Length = 148
Score = 206 bits (503), Expect = 9e-54
Identities = 86/125 (68%), Positives = 114/125 (91%)
Frame = +2
Query: 65 DKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEK 244
+ FQHILR++NTN+DGK+K+MFA+T+IKG+GRR+SNI KKADID++KRAGE T EE+E+
Sbjct: 3 EDFQHILRLLNTNVDGKQKIMFALTSIKGIGRRFSNIACKKADIDMNKRAGELTPEELER 62
Query: 245 IVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHY 424
++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHY
Sbjct: 63 LMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHY 122
Query: 425 WGLRV 439
WGLRV
Sbjct: 123 WGLRV 127
>07_01_0525 +
3904388-3904390,3904485-3904645,3905347-3905394,
3905714-3905902,3906872-3906977
Length = 168
Score = 195 bits (476), Expect = 2e-50
Identities = 90/147 (61%), Positives = 118/147 (80%), Gaps = 16/147 (10%)
Frame = +2
Query: 47 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 211
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRSGVVC 60
Query: 212 -----------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLD 358
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+ LD
Sbjct: 61 YYLAVHNYVEWAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNALD 120
Query: 359 SKLREDLERLKKIRAHRGMRHYWGLRV 439
KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 MKLRDDLERLKKIRNHRGLRHYWGLRV 147
>03_06_0283 -
32832572-32832677,32833343-32833531,32833582-32833796,
32833900-32833902
Length = 170
Score = 194 bits (472), Expect = 5e-50
Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 18/149 (12%)
Frame = +2
Query: 47 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKR----- 211
MSL+ + FQHILR++NTN+DGK+K+MFA+T+IKGVGRR+SNI KKADID++KR
Sbjct: 1 MSLIAGEDFQHILRLLNTNVDGKQKIMFALTSIKGVGRRFSNIACKKADIDMNKRQEPPP 60
Query: 212 -------------AGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSN 352
AGE T EE+E+++T+++NPRQ+K+PDWFLNR+KD DG++SQ+ S+
Sbjct: 61 PPSRRQISVMVGGAGELTPEELERLMTVVANPRQFKVPDWFLNRKKDYKDGRFSQVVSNA 120
Query: 353 LDSKLREDLERLKKIRAHRGMRHYWGLRV 439
LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 121 LDMKLRDDLERLKKIRNHRGLRHYWGLRV 149
>07_01_0531 + 3928833-3928867,3930848-3930943,3931873-3931978
Length = 78
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/51 (68%), Positives = 42/51 (82%), Gaps = 1/51 (1%)
Frame = +2
Query: 290 WFL-NRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAHRGMRHYWGLRV 439
W L R+KD DG++SQ+ S+ LD KLR+DLERLKKIR HRG+RHYWGLRV
Sbjct: 7 WILPERKKDYKDGRFSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRV 57
>08_01_0035 -
262750-262962,263046-263277,263420-263627,263762-264011,
265232-265342
Length = 337
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -1
Query: 342 VNWLYL-PSTISFCLLRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 169
+NWLY S + ++ SG+L +CL F + I ST++ + A + A + +
Sbjct: 218 INWLYTYDSIVPALIIITTSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWM 277
Query: 168 EYRRP-TPLIAVIANITL 118
+R P + + AV ITL
Sbjct: 278 IFRNPISAMNAVGCAITL 295
>04_04_1697 -
35454337-35454576,35454657-35454888,35455045-35455252,
35455380-35455629,35456232-35456354
Length = 350
Score = 31.5 bits (68), Expect = 0.44
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = -1
Query: 342 VNWLYLPSTISFCL-LRNQSGIL-YCLGFDMIVTIFSTSSSVHSPARLSRSISAFFNTML 169
V W Y +I+ L + SG+L +CL F + I ST++ + A + A + L
Sbjct: 222 VTWFYTHDSIASALVIIIGSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWL 281
Query: 168 EYRRP-TPLIAVIANITL 118
+R P +P+ A+ ITL
Sbjct: 282 IFRNPISPMNAIGCAITL 299
>03_05_0839 + 28097780-28097878,28098573-28098782,28099196-28099372
Length = 161
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 368 REDLERLKKIRAHRGMRHYWGLRV 439
R +ERLK+IR +RG+RH GL V
Sbjct: 108 RVAIERLKEIRCYRGIRHKLGLPV 131
>03_01_0404 + 3138624-3140096
Length = 490
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 320 DGKYSQLTSSNLDSKLREDLERLKKIRAHRGMR 418
+G Y QL++ LDS ++D R++K+ RG+R
Sbjct: 403 EGVYVQLSNIYLDSNRKDDARRVRKLIGSRGIR 435
>01_01_0735 + 5730783-5733320
Length = 845
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 182 KKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVD 322
K AD L K E E+ K+VT M Y P+W ++ + VD
Sbjct: 672 KVADFGLSK----LIEREISKVVTRMKGTPGYMAPEWLTSQITEKVD 714
>02_05_1211 +
34956601-34956850,34956950-34957102,34957562-34957674,
34958092-34958198,34958289-34958404,34958502-34958577,
34958652-34958693,34958809-34958917,34959102-34959199,
34959297-34959390,34959517-34959642
Length = 427
Score = 27.5 bits (58), Expect = 7.1
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 188 ADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDS-- 361
+ +DLD R+G T V K T+ NP + ++ + + KD Y +LT+ N ++
Sbjct: 190 SSVDLDIRSGSNTRHVVLKRQTVTLNPVRSRMCE--IPGAKDNSKVGYIKLTTFNQNAAG 247
Query: 362 KLREDLERLKK 394
++E L++L++
Sbjct: 248 SVKEALQKLRE 258
>09_06_0179 +
21380018-21380346,21380468-21380595,21380710-21380853,
21380938-21381086,21381226-21381361,21381583-21381679,
21382056-21382156,21382354-21382466,21382865-21382936,
21382970-21383161,21383249-21383344,21383463-21383615
Length = 569
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -1
Query: 327 LPSTISFCLLRNQSGILYC----LGFDMIVTIFSTS--SSVHSPARLSRSISA 187
LPS S LL G++ LG +++++I S S++HSPA+L S+ A
Sbjct: 214 LPSISSAILLAAAIGVIEASALILGSEILLSIMGVSHASTMHSPAKLFLSLRA 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,515
Number of Sequences: 37544
Number of extensions: 237100
Number of successful extensions: 718
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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