Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G24
(464 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 149 3e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 148 4e-37
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.26
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.46
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.61
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 2.5
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 3.3
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 4.3
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 5.7
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 5.7
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 7.5
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 7.5
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 7.5
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 7.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.9
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 9.9
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 9.9
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 24 9.9
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 9.9
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 24 9.9
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 9.9
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 149 bits (360), Expect = 3e-37
Identities = 73/114 (64%), Positives = 83/114 (72%)
Frame = +2
Query: 32 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 211
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 212 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 373
+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 148 bits (359), Expect = 4e-37
Identities = 76/132 (57%), Positives = 90/132 (68%)
Frame = +2
Query: 32 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 211
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 212 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 391
+ VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L + I +++
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVL 119
Query: 392 QPATQGGYGGRR 427
PA Q + R+
Sbjct: 120 APAPQERFRRRQ 131
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.26
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 247 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 113
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 0.46
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +2
Query: 254 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 388
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.61
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -2
Query: 232 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 83
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 221 SQVRGISIKLQEEERERRDNYVPEV 295
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 206 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 298
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 3.3
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -2
Query: 445 YNISLITSATVASLCSRLR*LQTINVTEVKH-LQHILGVRIDFNDILF*SRYFWDIIVTP 269
+N ++ + RL T +V+H L+ +L + I+ + +YF I TP
Sbjct: 439 FNFNVALPTCLVKERDRLTFDTTYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETP 498
Query: 268 FTLLFLKLNRDSSHLGVYETSHQ 200
+L + +DS+ L YE+S Q
Sbjct: 499 VRILSCRCVKDSTLLPPYESSSQ 521
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 211 TSHQMGGEPSNFVAKRLSRNDSN 143
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 5.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 311 PVLEQILLGHNCHAF 267
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 5.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +2
Query: 215 IHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQ 394
IH+Q + +L EE + P +S + VDS + + DF + L L+
Sbjct: 463 IHAQPNAVYCRLMEEVGMTSKSISPSLSGISAPSASVDSSASRLAR--DFGS---LSLSS 517
Query: 395 PATQGGYGG 421
+ G GG
Sbjct: 518 NSLLGSLGG 526
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 245 KLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 376
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 277 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 185
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 7.5
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 167 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 334
+R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
Query: 335 TKDMLKMLDFSNI 373
K L S++
Sbjct: 432 RYKRKKGLKDSDV 444
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 7.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 96 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 185
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 176 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 286
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 135 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 257
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 140 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 232
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/62 (20%), Positives = 33/62 (53%)
Frame = +2
Query: 221 SQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLTQPA 400
SQ+R +++ ++ + ++ D YV + I + +S + ++LD+ NG ++ A
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICKPESFPANYQEVLDYYTHNGFRVIACA 818
Query: 401 TQ 406
++
Sbjct: 819 SK 820
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 212 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNIN 376
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 191 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKD 343
+ HLM ++ + + QEE R+RR ++ E E++ +D D +
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 9.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 239 SIKLQEEERERRDNYVPEVSALEQDIIEVDSDTK 340
SI Q ++ D V + S EQD EVD+D K
Sbjct: 18 SIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYK 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,457
Number of Sequences: 5004
Number of extensions: 34371
Number of successful extensions: 128
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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