Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G24
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   137   4e-33
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    30   0.94 
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    27   6.6  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    27   6.6  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  137 bits (331), Expect = 4e-33
 Identities = 67/115 (58%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
 Frame = +2

Query: 32  MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 211
           M RVRT             YYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60

Query: 212 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTKDMLKMLDFS 367
           +    VRGISIKLQEEERERRDNY+PE+S ++      I+VD+DT DMLK   F+
Sbjct: 61  IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +2

Query: 203 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNING 379
           +R L   +V  ++ ++  EE+ R       +++  QDI + D+  ++ML+ +  +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 29.9 bits (64), Expect = 0.94
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 185 GFTTHLMRRLIHSQVRGISIKLQEEERE 268
           GFT  L  RLI +++R +   ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +2

Query: 200 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 310
           ++ R ++SQ+  +SI L+ E +ER+D+Y   + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218


>U39654-3|AAA80406.1|  490|Caenorhabditis elegans Hypothetical
           protein C56G3.1a protein.
          Length = 490

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 181 NFVAKRLSRNDSNFLTYPFIGI 116
           N+  + +S N SN+LTYPF G+
Sbjct: 8   NYCDRGISPNASNYLTYPFDGL 29


>U39654-2|AAM51505.1|  510|Caenorhabditis elegans Hypothetical
           protein C56G3.1b protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 181 NFVAKRLSRNDSNFLTYPFIGI 116
           N+  + +S N SN+LTYPF G+
Sbjct: 28  NYCDRGISPNASNYLTYPFDGL 49


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 158 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 274
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 158 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 274
           T  L NK AG    L R+    + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,772,990
Number of Sequences: 27780
Number of extensions: 188516
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)