Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_G23
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.06c |swi1||replication fork protection complex subunit S... 30 0.29
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 1.6
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 2.7
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.7
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 3.6
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 26 3.6
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.8
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 6.3
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 8.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 25 8.3
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 29.9 bits (64), Expect = 0.29
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = -2
Query: 523 ADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLKKFYQTS 344
A+ + LN++ + K M + + I RK+ H S + DD E F+Q+
Sbjct: 872 ANRREALNKITDRKRKKMKTNETIIDHTTRKKKENHLRSAKYIVDSDDDSETDIAFFQSE 931
Query: 343 TSLKKKNKKWPPLTFNAKMSWSKKGK 266
+L++KN + F +GK
Sbjct: 932 AALREKNAQKASALFKRIDDLEMEGK 957
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 451 IPPEQRKEIGQHYYSIFAAIPRDDYLELLKKFYQTSTSLKKKN-KKWPPLTFNAK 290
+PP Q K I +H+Y+I + +L KF + T ++ K K+ P T AK
Sbjct: 100 LPPLQGKTISEHFYNIGLEF-AEPHLSKAIKFSKIDTPVQPKTWKRQPGWTKYAK 153
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 317 VAPPDIQCQNVLVEKGKEHSVSTSVQSNSK 228
++P D+Q Q+ L+EK + S S + S +K
Sbjct: 125 LSPTDLQAQSKLIEKPRRRSASNATGSLNK 154
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = -2
Query: 574 NDMFKKLNMVLLGQAGLADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAA 395
ND+ K+L+ V+ Q S +++ Y +N + E+ + I +YY+
Sbjct: 1038 NDLHKRLSDVINSQQKFLSLSPQVSKDYYDVRSKLNDTAGSFSGEEMRAIDDNYYASRIK 1097
Query: 394 IPRDDY 377
DDY
Sbjct: 1098 QLEDDY 1103
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 518 ICKTCLTEEYHIQFFKHVIYC 580
+CK + EYH+ F+ ++ C
Sbjct: 441 VCKADIEREYHVYLFEKILLC 461
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.6
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = -2
Query: 502 NELYSFQEKLMNSRQKNIPPEQRKEI 425
N+L++ + L +++ +PPEQR+ +
Sbjct: 10 NQLFADVKDLERKKKRRVPPEQRRRV 35
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 263 HSVSTSVQSNSK*WYWQ*EYSQLQYYAYKAKASVLSSEIIKGPSDWVHFEEN 108
HS S+S Q K + ++ QL +AY+ KA + ++I HF +N
Sbjct: 4 HSSSSSDQGTKKKGF---KFRQLPEHAYQGKAKRIKQDLILKAKTKKHFYKN 52
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 520 DGSQHLNELYSFQEKLMNSR 461
DGS+ NELYSF K N R
Sbjct: 634 DGSRIENELYSFSVKQKNQR 653
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 559 KLNMVLLGQAGLADGSQHLNELYSFQEKL 473
K M L ++D ++H NE++ +EKL
Sbjct: 248 KSEMEALKAKSISDATKHKNEIFQLEEKL 276
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 514 SQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLKK 359
S H +YS++++L RQK ++GQ Y + A + D+ + + K+
Sbjct: 56 SMHTVAIYSYEDRLSMHRQKADESYPIGKVGQ-YSPVGAYLAIDEIVSIAKR 106
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -2
Query: 514 SQHLNE--LYSFQEKLMNSRQKNIPPEQR 434
SQ NE L+ + + ++ RQK++ P+QR
Sbjct: 497 SQQYNESTLFQYLSEFVHQRQKSLTPKQR 525
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 376 NSHPSG*QRICCNNAVRSPFFVLVVCFSALNSLVSPGRNIVHSN 507
NS G + CN+ + + + + F +S++S ++ +HSN
Sbjct: 630 NSITDGKLNVHCNDIIPGRYHLKTIVFKLKDSVLSFQKDCLHSN 673
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -2
Query: 505 LNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLKKFYQTSTSLKKK 326
L Y E+ N + K+I E ++ ++ I + I D L + KK Y + +K
Sbjct: 836 LKYFYDAIEQSTNLKLKSISQEDTIDLMRNQTFILSRISSDTILLVPKKLYPSKRKKLRK 895
Query: 325 N 323
N
Sbjct: 896 N 896
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,346
Number of Sequences: 5004
Number of extensions: 48098
Number of successful extensions: 155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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