Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G23
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           29   2.8  
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115...    28   4.9  
05_05_0299 - 23930657-23932627                                         28   6.5  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    28   6.5  
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465...    28   6.5  
12_01_0901 - 8736190-8736240,8736426-8736821                           27   8.5  
12_01_0136 + 1051853-1052245,1052352-1052807                           27   8.5  
11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104           27   8.5  

>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 YWSWEYSHCQYHHFEFDWTLVETECSFPFSTRTFWH*MSGGATFYFSS 333
           +W W++ HC   H++F   +  T+     + + F+   +G    YF +
Sbjct: 285 HW-WDHLHCAMSHYKFVLAIENTKTESYVTEKLFYALEAGSVPIYFGA 331


>07_01_0163 +
           1149466-1150593,1150733-1150937,1151453-1151485,
           1152244-1153646
          Length = 922

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 394 IPRDDYLELLKKFYQTSTSLKKKNKKWPPLTFNAKMSWSKKGK 266
           +  +D LE L+  +    +  + + KWPP+T  + + W KK K
Sbjct: 493 LSEEDGLERLEMAHIRMEAALEMSGKWPPVTDASLLRWRKKLK 535


>05_05_0299 - 23930657-23932627
          Length = 656

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -2

Query: 529 GLADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPR-DDYLELLKKFY 353
           G  DG +  ++L+  + K  +   K    E++KE  Q    IF      D+  + LKKF+
Sbjct: 203 GDGDGGEDDDDLFQVKPKGGDGGNKEDDDEEKKETEQILIDIFGKDEELDENSKFLKKFF 262

Query: 352 QTSTSLKK-KNKKWPP 308
                L+    KK+ P
Sbjct: 263 LERPYLETGSEKKYSP 278


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 KNIPPEQRKEIGQHYYSIFAAIPRDDYL 374
           +N+PP+  + + +H    FA   RD YL
Sbjct: 204 RNVPPDPDETVSEHVEHFFAVNHRDHYL 231


>02_01_0622 -
           4658133-4658150,4658269-4658337,4658436-4658462,
           4658808-4658873,4658954-4659076,4659562-4659629,
           4659703-4659766,4659994-4660135,4660218-4660306,
           4660574-4660637,4660870-4661021,4661124-4661261,
           4661742-4661867,4661971-4662183,4662343-4662426,
           4662583-4662742,4662993-4663126,4664047-4664136,
           4664313-4664471,4665528-4665611,4666170-4666289,
           4666338-4666391,4666899-4666945,4667556-4667598,
           4667730-4668586,4668845-4668899
          Length = 1081

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -2

Query: 181 IRQKLVFYHQRLLRARPIGSTLKKTKIRINEEATFVARISIKKGEVILKSDE 26
           +RQK++    R  R+ P+ S +KK ++ I++  T+V    +KK  +I K +E
Sbjct: 233 VRQKIITATSR--RSVPLPSNMKKRRLLIDQMKTYVL---MKKLGIITKDEE 279


>12_01_0901 - 8736190-8736240,8736426-8736821
          Length = 148

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 469 NSRQKNIPPEQRKEIGQHYYSIFAAI---PRDDYLEL 368
           ++RQ+ +PP   + +G H+  ++  I   P DD+L L
Sbjct: 91  STRQQQLPPRPARPLGYHHGVLWPTIEITPCDDFLNL 127


>12_01_0136 + 1051853-1052245,1052352-1052807
          Length = 282

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 432 FLCSGGMFFCLEFISFSW 485
           F+C  G+FF L F  FSW
Sbjct: 184 FMCQVGLFFRLTFWEFSW 201


>11_01_0135 + 1129849-1130244,1131125-1131542,1131986-1132104
          Length = 310

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 432 FLCSGGMFFCLEFISFSW 485
           F+C  G+FF L F  FSW
Sbjct: 185 FMCQVGLFFRLTFWEFSW 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,460
Number of Sequences: 37544
Number of extensions: 300728
Number of successful extensions: 752
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)