Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G23
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-4|CAA90441.1|  382|Caenorhabditis elegans Hypothetical pr...    33   0.12 
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z50109-4|CAA90441.1|  382|Caenorhabditis elegans Hypothetical
           protein C09H10.6 protein.
          Length = 382

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -2

Query: 550 MVLLGQAGLADGSQHLNELYSFQEKLMNSRQKNIPPEQRKEIGQHYYSIFAAIPRD-DYL 374
           +VLLG+ G++DG     + +   ++ +N ++  +PP  RK I Q Y  I  A   D +Y 
Sbjct: 194 LVLLGEHGISDGK--YTQAFEDLDRALNIQRNVLPPSSRK-IAQTYILIGNACASDANYD 250

Query: 373 ELLKKFYQTSTSL 335
           E ++ F +T   L
Sbjct: 251 ETVQYFGKTKDVL 263


>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
           protein W10C6.1 protein.
          Length = 1461

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 467 IH*FLLEGI*FIQMLRTICKTCLTEEYHIQFFKHVIYCLSV 589
           +H  LLE I +  +L  +      EEY++Q FKH++  +++
Sbjct: 384 MHSILLELIPYAYLLAKVMNYRAFEEYYVQLFKHLLSQIAI 424


>Z68117-2|CAA92178.1|  333|Caenorhabditis elegans Hypothetical
           protein F45E6.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = -2

Query: 217 GNENIPNSNIMPIRQKLVFYHQRLLRARPIGSTLKKTKIRINEEATFVARISIKKGEVIL 38
           G+ NI NS I     + V  H+R L      +  K+  I  +     +AR +I+ GE + 
Sbjct: 115 GDRNISNSYIRHFNCQNVQLHRRFLEFVLHYTKAKQINIVAHSMGVSIARKAIQGGEFVT 174

Query: 37  KSD 29
           K++
Sbjct: 175 KTE 177


>U23169-4|AAC46697.1|  706|Caenorhabditis elegans Hypothetical
           protein C29H12.5 protein.
          Length = 706

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 445 VVCFSALNSLVSPGRNIVHSNAANHLQDLLDR 540
           V CF   + L SP + I+H +A + + D+L R
Sbjct: 457 VECFYFHSMLASPMKEIIHYHANDKISDVLQR 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,551
Number of Sequences: 27780
Number of extensions: 273036
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)