Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_G23
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.045
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.74 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 475 LMNSRQKNIPPEQRKEIGQHYYSIFAAIPRDDYLELLKKFYQTSTS 338
           L+ SR+ + PPE  K + + Y+ +   +P DD   L  +   +S+S
Sbjct: 408 LIGSRRTSPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQSDSSSSS 453


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 358 FYQTSTSLKKKNKKWPPLTFNAKMSW 281
           +YQ +   KK  K  PPL+ + ++ W
Sbjct: 284 YYQLTDLYKKIKKAVPPLSLHGQLLW 309


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 341 CRGLIKFL*KF*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 460
           C G I FL      +P DS E   + +S LLSL  +++ L
Sbjct: 251 CMG-ISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 289


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 341 CRGLIKFL*KF*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 460
           C G I FL      +P DS E   + +S LLSL  +++ L
Sbjct: 247 CVG-ISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLL 285


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 452 HTTRTKKGDRTALLQHI 402
           HT RTK GD T ++  I
Sbjct: 23  HTCRTKNGDYTKIMPDI 39


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 154 DDKTLAFAL*A*YWSWEYS 210
           DDK   F L    W+W ++
Sbjct: 646 DDKVFGFPLDRPMWAWNFT 664


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 154 DDKTLAFAL*A*YWSWEYS 210
           DDK   F L    W+W ++
Sbjct: 646 DDKVFGFPLDRPMWAWNFT 664


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 182 RHNIGVGNILIASTIIL 232
           +HN+ V NIL AS   L
Sbjct: 274 KHNVFVNNILAASACSL 290


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 341 CRGLIKFL*KF*IVIPRDSSEYAVIMLSDLLSLFWWYVFL 460
           C G I FL      +P DS E   +  S LLSL  +++ L
Sbjct: 260 CVG-ITFLTVLVFYLPSDSGEKVSLCSSILLSLTVFFLLL 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,769
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)